Query= MSMg01no540_n07.b1 MSMg01no540_n07.b1 CHROMAT_FILE:
MSMg01no540_n07.b1 PHD_FILE: MSMg01no540_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:15 2005
(629 letters)
>mm_chr3_147083747_147084776
Length = 1030
Score = 1166 bits (603), Expect = 0.0
Identities = 621/627 (99%), Gaps = 1/627 (0%)
Strand = Plus / Minus
Query: 4 gaattcctatat-ttctactatcccccactccgcctttcctggcagctggtgagtagata 62
|||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattcctatatactatactaccccccactccgcctttcctggcagctggtgagtagata 771
Query: 63 gtctctgccatatggggttctaattgtctttatgattccctctgccctatcttggaaaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gtctctgccatatggggttctaattgtctttatgattccctctgccctatcttggaaaga 711
Query: 123 ttctgatcctggaagtagaacatcagtcttgtaccccgaacgtcactatgagacatgaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttctgatcctggaagtagaacatcagtcttgtaccccgaacgtcactatgagacatgaag 651
Query: 183 tcatattattttaaggccatcctggagccactatcagaatctttacactctctcctccct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tcatattattttaaggccatcctggagccactatcagaatctttacactctctcctccct 591
Query: 243 cactgagttgaactaaagatgagtctcatacaatcccttgataagacttttgtatggtag 302
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 590 cactgagttgaactaaagatgagtctcatacaatcccttgataagatttttgtatggtag 531
Query: 303 catagctatgtgtatcacaacacaactataacagagtagatataggatacttagcagttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 catagctatgtgtatcacaacacaactataacagagtagatataggatacttagcagttt 471
Query: 363 agtttctttataactacccgtatgattgacacattttgtaagcattgcccttgtttagag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 agtttctttataactacccgtatgattgacacattttgtaagcattgcccttgtttagag 411
Query: 423 atgggggatgcatgaagatggaaaacactggcaggatacctcaaaacccaaggaatttaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 atgggggatgcatgaagatggaaaacactggcaggatacctcaaaacccaaggaatttaa 351
Query: 483 agggttgagtaatatgaaattattccttcttcgcataacaaatctggtatgatttatatc 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 350 agggttgagtaatatgaaattattccttctttgcataacaaatctggtatgatttatatc 291
Query: 543 cttaattgttatctaaaactgtcattccccaaacatctggagctgtaaagatatacaact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cttaattgttatctaaaactgtcattccccaaacatctggagctgtaaagatatacaact 231
Query: 603 aaaatttattcttgtgcagctactgtg 629
|||||||||||||||||||||||||||
Sbjct: 230 aaaatttattcttgtgcagctactgtg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space: 631380
Effective search space used: 631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_n07.g1 MSMg01no540_n07.g1 CHROMAT_FILE:
MSMg01no540_n07.g1 PHD_FILE: MSMg01no540_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:15 2005
(609 letters)
>mm_chr3_146925025_146926033
Length = 1009
Score = 1122 bits (580), Expect = 0.0
Identities = 604/618 (97%), Gaps = 10/618 (1%)
Strand = Plus / Plus
Query: 1 tttccttcaatttttccttcctattactcagtagagaaattttctttagattaatcttaa 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccttcaattttcccttcctattactcagtagagaaattttctttagattaatcttaa 260
Query: 61 agaaaactaataagggatataagagtccaacaaaatgtttctcctaaggacaaaattggg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agaaaactaataagggatataagagtccaacaaaatatttctcctaaggacaaaattggg 320
Query: 121 aaaagttcaacctggtatttgagtcaaagaattttagagggattttaggtacctttgctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagttcaacctggtatttgagtcaaagaattttagagggattttaggtacctttgctt 380
Query: 181 gcttgctgaatatatttcagatatgcacacacacacacacacacacacacacacacaca- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgctgaatatatttcagatatgcacacacacacacacacacacacacacacacacac 440
Query: 240 ---------actccctggaaactaaaattgataaatgaagtttaaaaactggaagtatgt 290
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacacacaactccctggaaactaaaattgataaatgaagtttaaaaactggaagtatgt 500
Query: 291 gtgtgtttaagtgtgattatgtttgtatatgtgtatgtatgtatttgagcttacatgtgt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgtttaagtgtgattatgtttgtatatgtgtatgtatgtatttgagcttacatgtgt 560
Query: 351 atgtgtgtggatatttgtgtgggcacatgtgtacatatttgtgtgcatgtgcatatatat 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgtgtggatatttgtgtgggcacatgtgtacatatttgtgtgcatgtgcatatatat 620
Query: 411 gcatgtgtatgtatacttatgtatgtttgtgtgcctacacatgtgtgtgcatgcacctgt 470
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatgtgtatgtacacttatgtatgtttgtgtgcctacacatgtgtgtgcatgcacctgt 680
Query: 471 gcatccatgcatgtgtgtgttcatatgtgtatatttgtatgtgcatgtgtgctatatgtg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatccatgcatgtgtgtgttcatatgtgtatatttgtatgtgcatgtgtgctatatgtg 740
Query: 531 tactcctgcatgactgcatgcctgtgtgcacgtgggttttgtgtgtgtgtgtgtgtgtgt 590
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 741 tactcctgcatgactgcatgcctgtgcgcacgtgggttttgtgtgtgtgtgtgtgtgtgt 800
Query: 591 gtgtgtgtgtgtgtgtgt 608
||||||||||||||||||
Sbjct: 801 gtgtgtgtgtgtgtgtgt 818
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 569 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 608
||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 411
Score = 76.1 bits (39), Expect = 7e-18
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 570 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 608
|||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 407
Score = 76.1 bits (39), Expect = 7e-18
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 570 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 608
|||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 409
Score = 74.2 bits (38), Expect = 3e-17
Identities = 38/38 (100%)
Strand = Plus / Minus
Query: 570 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 607
||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 406
Score = 68.4 bits (35), Expect = 2e-15
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacacaa 240
|||||||||||||||||||||||||||||||||||
Sbjct: 813 cacacacacacacacacacacacacacacacacaa 779
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 815 cacacacacacacacacacacacacacacacaca 782
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 817 cacacacacacacacacacacacacacacacaca 784
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 819 cacacacacacacacacacacacacacacacaca 786
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 821 cacacacacacacacacacacacacacacacaca 788
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 823 cacacacacacacacacacacacacacacacaca 790
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 825 cacacacacacacacacacacacacacacacaca 792
Score = 66.5 bits (34), Expect = 6e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 206 cacacacacacacacacacacacacacacacaca 239
||||||||||||||||||||||||||||||||||
Sbjct: 827 cacacacacacacacacacacacacacacacaca 794
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 207 acacacacacacacacacacacacacacacaca 239
|||||||||||||||||||||||||||||||||
Sbjct: 828 acacacacacacacacacacacacacacacaca 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 163
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 17
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
