Query= MSMg01no541_f09.b1 MSMg01no541_f09.b1 CHROMAT_FILE:
MSMg01no541_f09.b1 PHD_FILE: MSMg01no541_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:56 2005
(624 letters)
>mm_chr3_65173321_65174342
Length = 1022
Score = 677 bits (350), Expect = 0.0
Identities = 375/386 (97%), Gaps = 6/386 (1%)
Strand = Plus / Minus
Query: 241 tctgctagcagccttcaggtaaagatgtagaactctcagctcctcctgcaccattcctgc 300
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tctgctagcagccttcgggtgaagatgtagaactctcagctcctcctgcaccattcctgc 963
Query: 301 ctggatactgccatgttcccaccttgatgataatggactaaacctttgaacctgtaagcc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ctggatacttccatgttcccaccttgatgataatggactaaacctttgaacctgtaagcc 903
Query: 361 agccccaattaaatgttgtccttataagagttgccttggtcatggtgtctgttaacagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 agccccaattaaatgttgtccttataagagttgccttggtcatggtgtctgttaacagca 843
Query: 421 gtaaaaccctaactaagacaaccaggtagaatattcttcatttgtctacctacttagtac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gtaaaaccctaactaagacaaccaggtagaatattcttcatttgtctacctacttagtac 783
Query: 481 ccacaatgatactgtccagttgcagacgatacatgctgttttggcctaaggtcaaactgc 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 782 ccacaatgatactgtccagttgcagacgatgcatgctgttttggcctaaggtcaaactgc 723
Query: 541 cctggatc--tccccccccttttttttttggattaattaaacatttatttctctgctccc 598
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cctggatccttctcccc----ttttttttggattaattaaacatttatttctctgctccc 667
Query: 599 tgaaggttttgtttcctgttttcctt 624
||||||||||||||||||||||||||
Sbjct: 666 tgaaggttttgtttcctgttttcctt 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no541_f09.g1 MSMg01no541_f09.g1 CHROMAT_FILE:
MSMg01no541_f09.g1 PHD_FILE: MSMg01no541_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:56 2005
(489 letters)
>mm_chr3_65012145_65013031
Length = 887
Score = 806 bits (417), Expect = 0.0
Identities = 469/487 (96%), Gaps = 4/487 (0%)
Strand = Plus / Plus
Query: 1 taggaagcctttaatgtctttttattgtttctgttcctgttgtaatccagctttaatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggaagcctttaatgtctttttattgtttctgttcctgttgtaatccagctttaatctg 260
Query: 61 tggtggtctgacgggatacaaagcgttatttcaattttcttgtatctgttgagacttgcc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggtggtctgacgggatacaaagggttatttcaattttcttgtatctgttgagacttgcc 320
Query: 121 tttgctaaatttagataaatttctataagatgggtcttaaatgtcacctatccaagagtt 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tttgctaaatttagataaatttctataagatggatcttaaatgtcacctatccaagagtt 380
Query: 181 acctcatgcatgtcagccgggtggtcttaggaagcatatttcttgggtctcaatgtctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctcatgcatgtcagccgggtggtcttaggaagcatatttcttgggtctcaatgtctta 440
Query: 241 agaaaaactgctaggggaatgtatctctgagaagatgtctaagctctgattctgttgctc 300
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agaaaaactgctaggagaatgtatctctgagaagatgcctaagctctgattctgttgctc 500
Query: 301 tgctgtgacattgtgttgtaagacacagaggactagatgtgatctgggactggttttgtt 360
||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 501 tgctgtgacattgtgttgtaagaggcagagggctagatgtgatctgggactggctttgtt 560
Query: 361 gcctctgcttattcattttgccacaactttccaagatacttgatacttcattggaaacca 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gcctctccttattcattttgccacaactttccaagatacttgatacttcattggaaccca 620
Query: 421 gacttgagatttttggtttttttggggtggtttttgttttttgttttttggttttttggt 480
||||||||||||||| |||| ||||||| |||||| |||||| |||||||||||| |||
Sbjct: 621 gacttgagatttttg--ttttctggggtgttttttggtttttggtttttggttttt-ggt 677
Query: 481 tt-tttg 486
|| ||||
Sbjct: 678 ttgtttg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space: 420083
Effective search space used: 420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
