Query= MSMg01no541_g13.b1 MSMg01no541_g13.b1 CHROMAT_FILE:
MSMg01no541_g13.b1 PHD_FILE: MSMg01no541_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:02 2005
(717 letters)
>mm_chr3_119296619_119297735
Length = 1117
Score = 1284 bits (664), Expect = 0.0
Identities = 699/716 (97%), Gaps = 11/716 (1%)
Strand = Plus / Plus
Query: 5 gaattccttata---ttttccattgtctagtttatactgcattctcaatacatctctttc 61
|||||||||||| || |||| ||||||||||||||||||||| |||||||||
Sbjct: 210 gaattccttatacagtt---catt-----gtttatactgcattctcaataaatctctttc 261
Query: 62 aaataagtaaatactaactttactaattttaatatcaattttaaaaatcaacttctctct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaataagtaaatactaactttactaattttaatatcaattttaaaaatcaacttctctct 321
Query: 122 ttgcctaataatagcttactttattctcattttgctcttgataaactaggaaaaaccctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgcctaataatagcttactttattctcattttgctcttgataaactaggaaaaaccctc 381
Query: 182 ccaccatggtccttaaaaacaaaaagaagtaagaaaaggtgggaaattttaatgtttatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaccatggtccttaaaaacaaaaagaagtaagaaaaggtgggaaattttaatgtttatt 441
Query: 242 ttagattaaaattaccattttctctatgtctggacaatataatgtatttacaagggaata 301
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttagattaaaattaccattttttctatgtctggacaatataatgtatttacaagggaata 501
Query: 302 tttataaacataagcaagtttggggggagaaccagagttagagcagatgggaaaagggtt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tttataaacataagcaagtttggggggagaaccagagttagagcagatgggaaaagggtt 561
Query: 362 aattaatgtcagatctcagttcctttttttcatgtgttctctgtgtgcaactgatgtctg 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aattaatgtcaggtctcagttcctttttttcatgtgttctctgtgtgcaactgatgtctg 621
Query: 422 tgaaaatatgctataaactgtaaacccctatgctatgtacaatttaaacagttttattaa 481
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 tgaaaatatgctataaactgcaaacccctatgctatgtacaaattaaacagttttattaa 681
Query: 482 aacaatacttcttgtttctttattcttaactatgtcattttggtcccatacatattagta 541
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aacaatacttcttgttcctttattcttaactatgtcattttggtcccatacatattagta 741
Query: 542 aaatttcttctgaaatattacaatattatctgcataagtaaataaagtattataatccaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaatttcttctgaaatattacaatattatctgcataagtaaataaagtattataatccaa 801
Query: 602 atctccatttatgcagacagagaaagaaaaatggagcaccatggtagcagtgttctccaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atctccatttatgcagacagagaaagaaaaatggagcaccatggtagcagtgttctccaa 861
Query: 662 agcagctctcagctcacttctgcaatgttaaataacatgaaaaaggaaaaataatg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agcagctctcagctcacttctgcaatgttaaataacatgaaaaaggaaaaataatg 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no541_g13.g1 MSMg01no541_g13.g1 CHROMAT_FILE:
MSMg01no541_g13.g1 PHD_FILE: MSMg01no541_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:02 2005
(661 letters)
>mm_chr3_119452727_119453788
Length = 1062
Score = 1228 bits (635), Expect = 0.0
Identities = 650/655 (99%), Gaps = 1/655 (0%)
Strand = Plus / Minus
Query: 1 tgttgaactcacataattccccctagattaaagtaatgaggacttggatgccatgtttgt 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tgttggactcacataattccccctagattaaagtaatgaggacttggatgccatgtttgt 796
Query: 61 cccctgtcaacccccaaatgccgaaggacctttgttctgagctaacaaatgtgactttta 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ccccggtcaacccccaaatgccgaaggacctttgttctgagctaacaaatgtgactttta 736
Query: 121 gggcttttgattcttttaaggatttattggttttaatgttgagatgatgagtcaaaggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gggcttttgattcttttaaggatttattggttttaatgttgagatgatgagtcaaaggca 676
Query: 181 agaactgagttgtttgttcattatccagacttcgcgttaatctgggtctgtgcttcctag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agaactgagttgtttgttcattatccagacttcgcgttaatctgggtctgtgcttcctag 616
Query: 241 ctccctgttttgtgaacctttctttgctgctctgattcctgg-tttttttgtttatattt 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 615 ctccctgttttgtgaacctttctttgctgctctgattcctggttttttttgtttgtattt 556
Query: 300 ttgttttgttattgtcatgttgttgccaggataagtttgaacttgctgtgtattttcatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgttttgttattgtcatgttgttgccaggataagtttgaacttgctgtgtattttcatt 496
Query: 360 tttttgttgttattcctggaatttgacaaaaatcattttcagcctaatgtttagtgtttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttttgttgttattcctggaatttgacaaaaatcattttcagcctaatgtttagtgtttg 436
Query: 420 ttacattattattcacttacaagtattttggcatttcataatagagaggcaagtaaatac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttacattattattcacttacaagtattttggcatttcataatagagaggcaagtaaatac 376
Query: 480 atgtttggctatagccatttattatatgatcaagacctatgagttcactctttattgtga 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 375 atgtttggctatagccatttcttatatgatcaagacctatgagttcactctttattgtga 316
Query: 540 cctgtacacttttctctattccttgctgctactgtcgcttagatgacccagttatttgca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cctgtacacttttctctattccttgctgctactgtcgcttagatgacccagttatttgca 256
Query: 600 ttgagtcccactaagttattctcctgcatcatgtccttttttttttttttttttt 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttgagtcccactaagttattctcctgcatcatgtccttttttttttttttttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1062
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1052
Effective search space: 684852
Effective search space used: 684852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
