NGGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGACTCATGATGTTAAATGCAGAAAATAATTTGAAGACTAG
TCACTGTCAAGCAGTGTTGGAGGGTTTATTGAAGCCATGTTTAGGCTTGG
GAGATGACTCAGTGGATAAAGCACTTACTGTGCACACTGAGACCTGAGTT
TAGATCCTTCTAACCCACTTAACCAGGTATGCTAGCCTTTACCCCAGGCC
TGACACCTGGGGCAGGAGGCAGGCACAGGAGAATCTCCCTTTGCCAACTA
GCCTGGGTATGCACTGACACACACTAAAAAACCTTGTAACAAACAAGGTG
GAAAGTAAGAAGAAACACACCTAAGTGGCCCTCTGATCTCTACATGCATG
CTGTGACACCTGGACACACACACAGAATTTGTGTTTAAGATCTATTTTTA
TTTCTGTATATATGTTTCTGTGTGAGGATATGACACACATACTTTTAAAA
AGACTTTTTTTTTCCCCTTTCTTTGTGTTGTTTTTAAGACAGACCCTGTC
TGTCCTGGAACTCGATCTGTAGGCCAGCCTGGTCTCAAGCTCACAGAGAT
CCGCCTTCCTCTGCCTCCCAAATGCTGGGATTAAAGGTGTGGGCCACCAC
CACCTGGTTAGAGGCGTTTTGATAGACCAGCACAGTCAAGAGCATGGATG
TGTGCTTCTCAAAGAGGAGTCGCAGAATCTAAGCTAGACACAGACAAGTG
TTGTTATAGGTTCTTCAA

NNNCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGACTACACA
GAGAAACCCTGTCTAANANAAAAAAAAAAAAAAAAAAAAAAAAAACAGTA
TGTATGGATTTTTATTGATAATTATTTTTTCTAATTTAGGAGACAACTAA
ACAAAGTGGTAATTATAAATTATAATTATAATGCATGGGGTTTTGTTTAT
AGCAATAACTACACAAGACAGAAAGTGAAAACCAGTTATTTTAGAATAAC
TTTTTATTTACTATTAAAATTAGTTTATACTAGCATGAACTATATTATAT
TAAGATGTTAATCTTTTCCTCAAGATAACTAATAATAAAATAGCTCAAAA
GCATATAGTGAAAAAGCAAAACATATCAAACCATAAAACAAGTTGCTTAT
GAACACACACACATGCATACACACCTATGTGCATATACCTATCAAAACCT
TAGGATGTAGAAAATAAAAATGTAATTAAGGAGAAAAACAGAAAATTAAT
AACAAAGACCCGAATAAGAGACCAACACAAAGATTGCAGGCTGAAGCAAT
GTCAGAAGCCTGACAGAAAGAAAAACTATAAACTCCTAACTGATAAGAGA
AAGGATCCAATAGAGACTCTGATACAACTCAGTGGAGCAAATAGAAAAAT
ATCAAGCACCCAGCAAGAATCAAAATTCCAAAACTGACTAATAAGGAAGT
AGAAAATTG

Query= MSMg01no541_j19.g1 MSMg01no541_j19.g1 CHROMAT_FILE:
MSMg01no541_j19.g1 PHD_FILE: MSMg01no541_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:20 2005
         (596 letters)



>mm_chr3_18913146_18914139
          Length = 994

 Score =  953 bits (493), Expect = 0.0
 Identities = 563/597 (94%), Gaps = 20/597 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagctaggactacacagagaaaccctgtctaananaaaaaaaaaaaaaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||                 |||||||
Sbjct: 217 caggacagctaggactacacagagaaaccctgtctag----------------aaaaaaa 260

                                                                       
Query: 61  aaaaaacagtatgtatggatttttattgataattattttttctaatttaggagacaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaacagtatgtatggatttttattgataattattttttctaatttaggagacaacta 320

                                                                       
Query: 121 aacaaagtggtaattataaattataattataatgcatggggttttgtttatagcaataac 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaagcagtaattataaattataattataatgcatggggttttgtttatagcaataac 380

                                                                       
Query: 181 tacacaagacagaaagtgaaaaccagttattttagaataacttttta-tttactattaaa 239
           ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||
Sbjct: 381 tacacaagacagaaagtgagaaccagttattttagaataacttttttgtttactattaaa 440

                                                                       
Query: 240 attagtttatactagcatgaactatattatattaagatgttaatcttttcctcaagataa 299
           |||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 441 attagtttatactaacatgaactagattattttaagatgttaatcttttcctcaagataa 500

                                                                       
Query: 300 ctaataataaaatagctcaaaagcatatagtgaaaaagcaaaacatatcaaaccataaaa 359
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ctaataataaaatagctcaaaagcatatagtgaaaaagcaaagcatatcaaaccataaaa 560

                                                                       
Query: 360 caagttgcttatgaacacacacacatgcatacacacctatgtgcatatacctatcaaaac 419
           |||||| |||||||||||||||||  |||||||||||||||||||||||||||||| |||
Sbjct: 561 caagttacttatgaacacacacac--gcatacacacctatgtgcatatacctatcagaac 618

                                                                       
Query: 420 cttaggatgtagaaaataaaaatgtaattaaggagaaaaacagaaaattaataacaaaga 479
           |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 619 cttagggtgtagaaaataaaaatgcaattaaggagaaaaacagaaaattaataacaaaca 678

                                                                       
Query: 480 cccgaataagagaccaacacaaagattgcaggctgaagcaatgtcagaagcctgacagaa 539
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cccga-taagagaccaacacaaagattgcaggctgaagcaatgtcagaagcctgacagaa 737

                                                                    
Query: 540 agaaaaactataaactcctaactgataagagaaaggatccaatagagactctgatac 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agaaaaactataaactcctaactgataagagaaaggatccaatagagactctgatac 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 994
Length adjustment: 10
Effective length of query: 586
Effective length of database: 984
Effective search space:   576624
Effective search space used:   576624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)