TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGAATGCGCGGA
ATTAAAACAGCCTCGCTACTCACTTCTAAAATGCACTTGGAGTGGGCCTT
CTTGAGTAGACTGCTGACTTTCTCACTCTTTTGCTCATATTTGAAAGGCA
CTTACCTAGCCCTGAACACCTTCTCCTTCAAGTCCAGGCCTAGGAAAAGG
AGCCTCTATTGGCAATAGAAGACAGTGTTCAAGCACGGGGGTTGCTTTGA
ATGACCTCACCTCTTGTCTGTAGCCTGACAGCTAGGATACGGTGTGCCCT
AAACATATATGTATTTTTACATATTTTTTCTTTCAATCACTCTACAATTT
TTGTTGCAGCCTCTACAAAATACATCTATGACACTTCCACACAACCATAG
AGACTACAGATCGAAACACTGTGACAGGAAAGTGGCTTTTGTAGACAGCT
CTATTTATGGCAGAGTATTGGGATTCAAAATCAGGGGGGAGAAAACCTGG
TGAATATGCAGATACTAGAAGCTGCTATTTCTGAAATTATTTGTCAAACA
TAAAAAAATATGAGTAGAGGCCCCTTCATGGCTATTCTGTCAACATCCAT
TTCCAAGGTGTATGCACACTGTCTCAGTGTTTTCCTTGGAGTAAGGTTTC
ATGTGAAAAATTACCGTTTTAATATCTTACATACTCCATATGTACAAACA
AATACTATTTTTATCTTTCCTTTGTATCTTATAACTTGGATTAAAACCAC
CTTGTTTCTTGAGTN

ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTAGCATCGAAGCTACCTGCAGCCAGT
CCTACTTTGAAAAATGAAGGCTCTTGGGCTGGTGAGATGGCTCAGCAGTC
GTGCTGACTAGTTTTATATCAACTTGACTCAAGCGAGAGAGGAGGGAACC
TCGATTGAGACAATGCCTCCAGTAGATCAGGCTGCAAGCAGGCATTTTCT
TAATTAGAGATTGATGGGGGAGGATAAGTCCATGGTGGGTGGGGACCACC
ACCCCCCCCCCCAGGCTAGTGGCCCTGCGTTCTATAAGAAGTTGGGTGAA
CGAGCCAGTAAGAAGCCACCTCTCCGTGGCCTCTGCATTAGTTCTTGCCT
CCAGGTTCCTGTCCTAACTGCTTTCCATGGTGAACTGTTAAATGGAAGTA
AAATAAACTCTTTCCTCCCCAAGTTGGTTTTGGTCATAGTGTTTATTACA
GCAGGTATATAAAGGTGCTTGTCACCAGACCTGACTACTATAATTCAATC
CCATAATCTATAGGATGGAAGGAGAGAACCAACTCCTGTAGNNGNNNNTT
TTTTTTTTTTTTTTTTTTTNTTTTGGGTTTTTGGGTTTTTGGTTTTTTCC
AGAAAGGGTTTCTCTGTGTAACCCTGGCTGGCCTGGAACTCTCTTTTTAG
ACCCAGGTGGCCTCCCAAGTGGTTGGATTAAAGGCGTGAGCCCCCACCTT
TATTTGTCTTTTGTG

Query= MSMg01no542_e11.b1 MSMg01no542_e11.b1 CHROMAT_FILE:
MSMg01no542_e11.b1 PHD_FILE: MSMg01no542_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:15 2005
         (596 letters)



>mm_chr3_157449615_157450609
          Length = 995

 Score = 1114 bits (576), Expect = 0.0
 Identities = 591/596 (99%), Gaps = 1/596 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctaaaatgcacttggagtgggccttcttgagtagactgctgactttctcactcttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctaaaatgcacttggagtgggccttcttgagtagactgctgactttctcactcttttg 260

                                                                       
Query: 61  ctcatatttgaaaggcacttacctagccctgaacaccttctccttcaagtccaggcctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcatatttgaaaggcacttacctagccctgaacaccttctccttcaagtccaggcctag 320

                                                                       
Query: 121 gaaaaggagcctctattggcaatagaagacagtgttcaagcacgggggttgctttgaatg 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gaaaaggagcctctattggcaatagaagacagtgttcaagcaggggggttgctttgaatg 380

                                                                       
Query: 181 acctcacctcttgtctgtagcctgacagctaggatacggtgtgccctaaacatatatgta 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acctcacctcttgtctgtagcctgacagctaggatatggtgtgccctaaacatatatgta 440

                                                                       
Query: 241 tttttacatattttttctttcaatcactctacaatttttgttgcagcctctacaaaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttacatattttttctttcaatcactctacaatttttgttgcagcctctacaaaatac 500

                                                                       
Query: 301 atctatgacacttccacacaaccatagagactacagatcgaaacactgtgacaggaaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctatgacacttccacacaaccatagagactacagatcgaaacactgtgacaggaaagt 560

                                                                       
Query: 361 ggcttttgtagacagctctatttatggcagagtattgggattcaaaatcaggggggagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcttttgtagacagctctatttatggcagagtattgggattcaaaatcaggggggagaa 620

                                                                       
Query: 421 aacctggtgaatatgcagatactagaagctgctatttctgaaattatttgtcaaacataa 480
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctggtggatatgcagatactagaagctgctatttctgaaattatttgtcaaacataa 680

                                                                       
Query: 481 aaaaatatgagtagaggccccttcatggctattctgtcaacatccatttccaaggtgtat 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 aaaaatatgagtagaggccccttcatggctattctgttaacatccatttccaaggtgtat 740

                                                                   
Query: 541 gcacactgtctcagtgttttccttggagtaaggtttcatgtgaaaaattaccgttt 596
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcacac-gtctcagtgttttccttggagtaaggtttcatgtgaaaaattaccgttt 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space:   577210
Effective search space used:   577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)