TTCTCCTTACGCTCTTCTTTCGCCTACTATATCAGACATCTATTCCTACA
ATAATCTTATACCCNGCTGTGGTTGGGTGTTGGTGGTCCCCTTTAAAAAA
TTTGGGCGGGGCCGGCTAATACGGAACTCCACCTAAATAAATTTTTTCTC
CAAAAAGGACCCGGCGGGGAAAATTTCCTCTGGTAGGCTTTGCTGGCCCT
CTTTTTCCCCCCTCCTTTTGGTTTGGGAAAGGGGGAAAAACAACACCACC
NNCCAACACCACAACAACTATNNCACACATTTACAACAAAACAAACACAA
CAAAATTTTTTATNTACATCCCCCCCCCCAAAAAACACCCACAAAAAAAA
AAAAAAAGGGGGGTGTTNTAACCCCCCCCCCAAGAAGGGGGGGGGGAAAA
TTTTCTCAAAAAAAAAAAAACCCCTCTTCACACCTTTTTTTTTTTTTTTT
NNNGAAAAAAAGGGGAGGGGGGGGGGGTTGGTAAAATTTTTTTTANNNNN
TTTTTTTAAAAAAAAAAATCTCGCCAAAAAAAAAAAAAACCCCCCCCTTN
TTTTGTGGGGGGGGGGGGGGGGCCCCC

NTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCCATGCCTATATGTATTTAGAC
CACAGGCAAACCAATAAAGTTGTCATAGAAACAAAGCATTTCATGAATAA
ATCAATCCATAACAAACTTGTAAACTTCAAACAACCCACTGTGCTTTAAC
AACACATCCGTTACATACACAGAATGATCATGTTTATAATGAGCAATGCA
CAATATTATTCTTTCTCATGTATTTGGTCCTGTTTGCCATCTTATAAATA
TTCCTTAATGTATTTTTATGTAGCCTGTGGATCCCCACTGTGTTAGAATG
AAATAAGTAACCCCAGCTGGTATGATAATACTGGGGAAAAAAACCAGCCG
TTTAAAACTGTCTCTCCTGGTGAACCCTAGTTCACACCCTAGTGTGTTTG
GAATACCTGCTCAGAGGGCCAGAGGGCGCTGAAATGACAGCTGAGAAAAG
TTTCCCCATTTCCAGCAGCCCTAGGACTCTTTTCCACCTTCTAGTTTTCT
TGTTTGATGTTCAGTTCCTTGTTCTGCATTCAGTGAGCGTCTTCAGGGAA
TTTGTTGGACTGCAACTAGGGTGGGGTGAGCTACTTTAAAAGTGACCCTG
GGTATTTTTAAAGAGCCCCGACCAGAAACTGCCATGGCTGGATCAGACAG
AGAGTATGCTTTGAGGAGGAAAAGATCGTGTGATTGTGTAAAGCCTATAT
TCTN

Query= MSMg01no542_e20.g1 MSMg01no542_e20.g1 CHROMAT_FILE:
MSMg01no542_e20.g1 PHD_FILE: MSMg01no542_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:17 2005
         (645 letters)



>mm_chr3_117829050_117830094
          Length = 1045

 Score = 1187 bits (614), Expect = 0.0
 Identities = 638/648 (98%), Gaps = 6/648 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgccatgcctatatgtatttagaccacaggcaaaccaataaagttgtcatagaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ctgccatgcctatatgtatttagaccacaggcaaaccaataaagttgtcatagaaacaaa 786

                                                                       
Query: 61  gcatttcatgaataaatcaatccataacaaacttgtaaacttcaaacaacccactgtgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gcatttcatgaataaatcaatccataacaaacttgtaaacttcaaacaacccactgtgct 726

                                                                       
Query: 121 ttaacaacacatccgttacatacacagaatgatcatgtttataatgagcaatgcacaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 ttaacaacacatccgttacatacacagaatgatcatgtttataatgagcaatgcacaata 666

                                                                       
Query: 181 ttattctttctcatgtatttggtcctgtttgccatcttataaatattccttaatgtattt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttattctttctcatgtatttcgtcctgtttgccatcttataaatattccttaatgtattt 606

                                                                       
Query: 241 ttatgtagcctgtggatccccactgtgttagaatgaaataagtaaccccagctggtatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttatgtagcctgtggatccccactgtgttagaatgaaataagtaaccccagctggtatga 546

                                                                       
Query: 301 taatactg--gggaaa-aaaaccagccgtttaaaactgtctctcctggtgaaccctagtt 357
           |||   ||  |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taa---tgttgggaaataaaaccagccgtttaaaactgtctctcctggtgaaccctagtt 489

                                                                       
Query: 358 cacaccctagtgtgtttggaatacctgctcagagggccagagggcgctgaaatgacagct 417
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 488 cacaccctagtgtgtttggaatacctgctcagaggaccagagggcgctgaaatgacagct 429

                                                                       
Query: 418 gagaaaagtttccccatttccagcagccctaggactcttttccaccttctagttttcttg 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagaaaagtttccccatttccagcagccctaggactcttttccaccttctagttttcttg 369

                                                                       
Query: 478 tttgatgttcagttccttgttctgcattcagtgagcgtcttcagggaatttgttggactg 537
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 tttgatgttcagttccttgttctgcattcagtgagcgtcttcggggaatttgttggactg 309

                                                                       
Query: 538 caactagggtggggtgagctactttaaaagtgaccctgggtatttttaaagagccccgac 597
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 308 caactagggtggggtgagctacttgaaaagtgaccctgggtatttttaaagagccccgac 249

                                                           
Query: 598 cagaaactgccatggctggatcagacagagagtatgctttgaggagga 645
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cagaaactgccatggctggatcagacagagagtatgctttgaggagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)