NNNNAACTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTCCCTACTATTTTCACCCCTGTATTGAGAAGGTTGACT
ATCCATTAAAACAAAAAGAAGAATCCTCCAGGTCCTAGTGGCTTGTGGAA
CAAAAAACAAAGTGTCCAGGTATTTGCACGATACCTCATTGGGAGTCATT
TGGGTGATGGTATTCTTAGAGGGAGCCTTGTGTGTACTTGTGTATGTGTG
TATTGTCTAGTGTATAGTGTGGGCTTACGTATGTATGGGGTCTTCTTACA
TCTGATGTATCTGCTCTCCTCTACCTTCACAATGGTCTCCATTAAACAAT
ATTCAATGGGACTGGCTTTAGGGTTCATACTTCAACTCAAAGCCCCTGCA
TTACTGACTGTTGGTGCTAACTCAGACCACTCATTTTATCTGGACCAGGA
GACAGAAATGGTTTAGAGACCAGCTAGTCAGTCTCTGCCCCAGTCAATCC
TTCTGGTTACTAAAGGGATTTTTCATCCCTTCACCTGCACAAAGAATATC
TGCACTGCATATACAAGTGGCATCACCTAAACAACATGGAGTTTCCATGT
GCATACCATGTCTGAAGAGGGCAAAGTCTTGGTGCCTAACTCCTATCACA
CCCTGTTGGGCTGCGTGTTTGCCTTGCTACTGGGGTGCCCAAGTGCAGCC
ACCAAGTCATTTAGGAGAAGCAGAACAGAGTTTGAGATAGGGCGTTCAAC
ACGTATTTTTCTGGGTGATAGAC

NAAANAATCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGGACA
CTGTTTTTAATAGGGTTATTTGATTATCTGTAGTCTAACTTCTTGAGTTC
TTTGTATATATTGGATATTAGCCCTCTATTACATGTAGGATTAGTAATGA
TCTTTCCCAATCTATTGGTTGCTGTTTTGTTCTATTGTCCTTTGCCTTAC
AGAAACTTTGCAGTTTTGTGAGCTATTCATTTGTCAATTATTGATCTTAG
AGCATAAGCATATTTTCTGTTCAGGATATCTTCCCCTGTGCCCATGTGCT
GGAGGTTCTTCCCCACTTTCTCTTCTATTACTTTCAGTTTATCTGGTTTT
ACGTGGAGGTCCTTGATCCATTTGGACTTGAGCTTTTACAAGGAGATAAG
AATGGATCTATTTGCATTCTTCTACATGCTAACTGCCAGTTGAACCAGCA
CCATTTGTTGAAAATGCTGTTCCCCCCCTCCACTGGATGGTTTTAGCTCC
TTTATCAAAGATCAAGTGACTATAGGTGTGTGAGTTTATTTCTGGGTCTT
CAGNTCTATTCTTATTGATCTATCTGCCTTTCACTGTATCAATACCATGC
AGNTTGTTTGTTTGTTTGTTTGTTTTAATCACGATTGCTCTGTAGTACAG
CTTGAGGTCAGACATGGTGATTCCCCATAATTTCTTTTATTGTTGAGAAT
AGTTTCACTATCCCAGTT

Query= MSMg01no542_h24.b1 MSMg01no542_h24.b1 CHROMAT_FILE:
MSMg01no542_h24.b1 PHD_FILE: MSMg01no542_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:33 2005
         (637 letters)



>mm_chr3_125491263_125492299
          Length = 1037

 Score = 1193 bits (617), Expect = 0.0
 Identities = 629/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccctactattttcacccctgtattgagaaggttgactatccattaaaacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttccctactattttcacccctgtattgagaaggttgactatccattaaaacaa 264

                                                                       
Query: 65  aaagaagaatcctccaggtcctagtggcttgtggaacaaaaaacaaagtgtccaggtatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagaagaatcctccaggtcctagtggcttgtggaacaaaaaacaaagtgtccaggtatt 324

                                                                       
Query: 125 tgcacgatacctcattgggagtcatttgggtgatggtattcttagagggagccttgtgtg 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcacaatacctcattgggagtcatttgggtgatggtattcttagagggagccttgtgtg 384

                                                                       
Query: 185 tacttgtgtatgtgtgtattgtctagtgtatagtgtgggcttacgtatgtatggggtctt 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 385 tacttgtgtatgtgtgtattgtctagtgtatagtgtgggcttatgtatgtatggggtctt 444

                                                                       
Query: 245 cttacatctgatgtatctgctctcctctaccttcacaatggtctccattaaacaatattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttacatctgatgtatctgctctcctctaccttcacaatggtctccattaaacaatattc 504

                                                                       
Query: 305 aatgggactggctttagggttcatacttcaactcaaagcccctgcattactgactgttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgggactggctttagggttcatacttcaactcaaagcccctgcattactgactgttgg 564

                                                                       
Query: 365 tgctaactcagaccactcattttatctggaccaggagacagaaatggtttagagaccagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctaactcagaccactcattttatctggaccaggagacagaaatggtttagagaccagc 624

                                                                       
Query: 425 tagtcagtctctgccccagtcaatccttctggttactaaagggatttttcatcccttcac 484
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagtcagtctctgccccagtcattccttctggttactaaagggatttttcatcccttcac 684

                                                                       
Query: 485 ctgcacaaagaatatctgcactgcatatacaagtggcatcacctaaacaacatggagttt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgcacaaagaatatctgcactgcatatacaagtggcatcacctaaacaacatggagttt 744

                                                                       
Query: 545 ccatgtgcataccatgtctgaagagggcaaagtcttggtgcctaactcctatcacaccct 604
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 ccatgtgcataccatgtctgaagagggcaaagtcttggtgccttactcctatcacaccct 804

                                            
Query: 605 gttgggctgcgtgtttgccttgctactggggtg 637
           |||||||||||||||||||||||||||||||||
Sbjct: 805 gttgggctgcgtgtttgccttgctactggggtg 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)