GGGGGGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCAGTCTACATTATTTTCCCTTCTGCTTTTGTTAGTTA
GGTCCTCGAACATCTTTGGTAACTTCAAAAATCTTTGTCTCTGGCCCATT
TCATTGCATGCAAATCAATTTTGAGATTTATTGGAATCTGTCAAACTTAG
GTTACCAAGAGGAGTGAGAAAGGGATGGCCTGAAAGAAGAATAACCCTAT
TTTCCAAGACAGCAGTTTTAAAGTCAAAAAGCTACCTGGGATAAAGCAGG
AATGTTTCTAAGATGTTGTTCCCCATGTTTCAAATGTGGGACCTGGAATC
TATAGAAATTACAACAAACTTCCCACTAATATACTTCCCTCCATCTTGAA
TACTTATTATTCCCTAGCTAAAATCACTTCTTTTAGAAACGCATAGATGT
TACCAAGGAAATAAGCTAAGATAACTAGGAGAGTGTATTTCGCTGAAAGA
AAAACAAAACAAAACAAAACACTATTGTAGACTTAATGCTTATCACTAAC
CTGTGAGCTAAGGCTATATTCTGGCCCATTATAGTCAATGGACTAAAGCT
TCTCTATGTTACTATTAAATATTTAAAACCATATGAGATTCTAATTTTCA
TAAATGTTCATCATGTGTACTTAATCACATGAAATTCATTTTCACTTTTA
CTTTTTCCAAATAAACGATATTGTCA

TAATTTAGGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGGACTCC
ATTTTCAATAGGGTTATTTGATTCTCTTGAGTCTAACTTCTTGAGTTTTT
TGTATATATTGGATATTGGCCCTCTACCAGATTTTGGGTTGATAAAGATC
TATTCCCAATCTGTTGGATGCCATTTAGTACTATTGATAGTGTCCTTTGT
CTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTTTTGATC
TTAGAGCATAAACCATTGGTGTTTTGTACAGGAAAATTTCCCCTGTACCC
ATGTGCTCAATGCTCTTCCCCACTTTCTCTTCTATTAGTTCCAATATATC
TGGTTATATGTGGAGGTCCTTGATCCAGTTGAAGTTTGAGCTTTATACAA
GGAAATAAGAGTAGATTATTTTACATGCTGACTGCCAGTTGAATCAGCAC
CATTTATTGAAAATGTTGTCTTTTTCCCACTGAATGGTTTTAGCTTCTTT
GTCAAAGATAAAGTGACCATAGATGTGTGGATTCATTTCTGGGTCTTCAA
TTCTGTTCCATTTATCTACCTGTCTATCTGTTCCATTGATCTACCTGCCT
ATCTGTACCAATACCATGGAGGTTTTCATTTTTTTGTTTGTTTGTTTTTA
TCACTATTGCTCTGCAN

Query= MSMg01no542_i04.b1 MSMg01no542_i04.b1 CHROMAT_FILE:
MSMg01no542_i04.b1 PHD_FILE: MSMg01no542_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:34 2005
         (674 letters)



>mm_chr3_74690410_74691483
          Length = 1074

 Score = 1118 bits (578), Expect = 0.0
 Identities = 642/670 (95%), Gaps = 11/670 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagtctacattattttcccttctgcttttgttagttaggtcctcgaacatctt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctcagtctacattattttcccttctgcttttgttagttaggtcctcggacatctt 264

                                                                       
Query: 65  tggtaacttcaaaaatctttgtctctggcccatttcattgcatgcaaatcaattttgaga 124
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 265 tggtaacttcataaatctttgtctctggcccatttcattgcatgcaaatcaatttttaga 324

                                                                       
Query: 125 tttattggaatctgtcaaacttaggttaccaagaggagtgagaaagggatggcctgaaag 184
           ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 325 tttattggaatctgtcaaacttaggttcccaagaggagtgagaaaaggatggcctgaaag 384

                                                                       
Query: 185 aagaataaccctattttccaagacagcagttttaaagtcaaaaagctacctgggataaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaataaccctattttccaagacagcagttttaaagtcaaaaagctacctgggataaag 444

                                                                       
Query: 245 caggaatgtttctaagatgttgttccccatgtttcaaatgtgggacctggaatctataga 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 caggaatgtttctaagatgttgttccccatgtttcaaatatgggacctggaatctataga 504

                                                                       
Query: 305 aattacaacaaacttcccactaatatacttccctccatcttgaatacttattattcccta 364
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct: 505 aattacaacaaacttcccactaatatacttccctccatcctgaatacttattattccctg 564

                                                                       
Query: 365 gctaaaatcacttcttttagaaacgcatagatgttaccaaggaaataagctaagataact 424
           ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||
Sbjct: 565 gctaaaatcacttcttttagaaaagcatagatgtttccaaggaaataagataagatcact 624

                                                                       
Query: 425 aggagagtgtatttcgctgaaagaaaaacaaaacaaaacaaaacactattgtagacttaa 484
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 625 aggagagtgtatttcggtgaaagaaaaacaaaacaaaacaaaacattattgtagacttaa 684

                                                                       
Query: 485 tgcttatcactaacctgtgagctaaggctatattctggcccattatagtcaatggactaa 544
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 685 tgcttatcactaacctgtgagctaaggctatattctagcccattatagtcaatggactaa 744

                                                                       
Query: 545 agcttctctatgttactattaaatatttaaaaccatatgagattctaattttcataaatg 604
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 745 agcttctctatgttactattaaatatttaaaaccatatgagattctgattttcataaatg 804

                                                                       
Query: 605 ttcatcatgtgtacttaatcacatgaaattcattttcacttttactttttccaaataaac 664
           |           ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 t-----------acttaatcacatgaaattcatttccacttttactttttccaaataaac 853

                     
Query: 665 gatattgtca 674
           ||||||||||
Sbjct: 854 gatattgtca 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)