Query= MSMg01no542_i05.b1 MSMg01no542_i05.b1 CHROMAT_FILE:
MSMg01no542_i05.b1 PHD_FILE: MSMg01no542_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:34 2005
(704 letters)
>mm_chr3_43966688_43967790
Length = 1103
Score = 1253 bits (648), Expect = 0.0
Identities = 685/698 (98%), Gaps = 3/698 (0%)
Strand = Plus / Plus
Query: 8 gaattcagaaaaggattgt-cgcagttatgtctccatgcaaaaacagtatgcctatgagg 66
||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 208 gaattcagaaaaggaatgtaggcagttatgtctccatgcaaaaacagtatggctatgagg 267
Query: 67 aaaaaaaaagtcatagattcattcttagataacattactcttacatgccatgaatgtatg 126
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 --aaaaaaagtaatagattcattcttagataacattactcttacatgccatgaatgtatg 325
Query: 127 taatgcttaagaacatttgtcactcttcatttgtaggtccaaatgtagaagtatttgata 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taatgcttaagaacatttgtcactcttcatttgtaggtccaaatgtagaagtatttgata 385
Query: 187 atcatttatatgttatttccttcctatgtaaattctgccccaccaaaaaccttgttcttt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atcatttatatgttatttccttcctatgtaaattctgccccaccaaaaaccttgttcttt 445
Query: 247 tgtctaatggatattatggaagtaatagcagcatttacactttctaatgacttaaaaatt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tgtctaatggatattatggaagtaatagcagcatttacactttctaatgacttaaaaatt 505
Query: 307 ttaacctcacttctaacttaagtactcgagttgacctgaaatgattgcaaatataatctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttaacctcacttctaacttaagtactcgagttgacctgaaatgattgcaaatataatctt 565
Query: 367 gtaggtaacaatactaaaattgaaatattagctggatgaatccactatggttatgcacct 426
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 566 gtaggtaacaatactaaaattgaaatattagctggatgaatccactatggctatgcacct 625
Query: 427 agtaatgtgttggtatttgcaatgttaccagttgcagttctttgtaatgatctctatgtg 486
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 626 agtaatgtgttggtatttgcaatgttaccagttgcagttctttttaatgatctctatgtg 685
Query: 487 ttgcagagaatcttctttgattagcgttggaacatactccggtctgtgatcataagtgtt 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ttgcagagaatcttctttgattagcgttggaacatactccggtctgtgatcataagtgtt 745
Query: 547 ttaaaggcattagaatttatgagagtttagctaagtgttagtataaagttctactctaaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttaaaggcattagaatttatgagagtttagctaagtgttagtataaagttctactctaaa 805
Query: 607 acccctgacctcagtatcactgtatatttgcctatgtttccagggccagttaaaatgtcc 666
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acccatgacctcagtatcactgtatatttgcctatgtttccagggccagttaaaatgtcc 865
Query: 667 atatagttgatttgaaaaggtctagttacaaagttgtt 704
|||||||||||||||||| |||||||| ||||| ||||
Sbjct: 866 atatagttgatttgaaaatgtctagttgcaaagctgtt 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1103
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1093
Effective search space: 758542
Effective search space used: 758542
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no542_i05.g1 MSMg01no542_i05.g1 CHROMAT_FILE:
MSMg01no542_i05.g1 PHD_FILE: MSMg01no542_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:34 2005
(635 letters)
>mm_chr3_44131474_44132508
Length = 1035
Score = 1166 bits (603), Expect = 0.0
Identities = 627/635 (98%)
Strand = Plus / Minus
Query: 1 ctaattcaggccaaaggactttcacctccatttgttctgcaaatcttgtatgtaactcca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1028 ctaattcaggccaaaggactttcacctccatttgttctgcaaaccttgtatgtaactcca 969
Query: 61 gtgctcttggtgaacctccagtcacagtttgaacgcattattctctatatagattaaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 968 gtgctcttggtgaacctccagtcacagtttgaacgcattattctctatataggttaaggt 909
Query: 121 tggccatagttttgtagtcaatatcctaacaatatagtttattcatgctgttatttttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tggccatagttttgtagtcaatatcctaacaatatagtttattcatgctgttatttttat 849
Query: 181 ataaatatttattggaaatactcagagtgcttacatagctattggcccatgacttataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ataaatatttattggaaatactcagagtgcttacatagctattggcccatgacttataaa 789
Query: 241 aatgagttgagaagaaaatgagagcaataaggctggctttcaatacttataatctatgct 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 788 aatgagttgagaagaaaatgagagcaatcaggctggctttcaatacttataatctatgct 729
Query: 301 gctaactaattgatcaaaatccataacataggaaattaactttaaggtcacaagacactc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 728 gctaactaattgatcaaaatccataacataggaaattaacttaaaggtcacaagacactc 669
Query: 361 agaagagtaaattacttttgtgctaggcatcactaaaggatatctccaggctcagcaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 agaagagtaaattacttttgtgctaggcatcactaaaggatatctccaggctcagcaaaa 609
Query: 421 tatattatgcacaactgctttcaacctatttcctagaaaattataacacctaactcagaa 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 608 tatattatgcacaactgctttcaacctatttcttagaaaattataacacctaactcagaa 549
Query: 481 tggatagttataaaatatgtaaaattttcaaaatttctataattggaaaggcagtaggta 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 548 tggatagttataaaatatgtaaaattttcaaaatttctataattggaaaggtagtaggta 489
Query: 541 cttaaagtcctaccctgagttatagaaaaggacatttatattaaaacagtaggccttata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 488 cttaaagtcctaccctgagttatagaaaaggacatttatattaaaacagtaggtcttata 429
Query: 601 cttacctaaaacaagtatagataagaattttgaag 635
|||||||||||||||||||||||||||||||||||
Sbjct: 428 cttacctaaaacaagtatagataagaattttgaag 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
