Query= MSMg01no542_j04.b1 MSMg01no542_j04.b1 CHROMAT_FILE:
MSMg01no542_j04.b1 PHD_FILE: MSMg01no542_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:39 2005
(669 letters)
>mm_chr3_75842139_75843206
Length = 1068
Score = 1185 bits (613), Expect = 0.0
Identities = 656/679 (96%), Gaps = 15/679 (2%)
Strand = Plus / Plus
Query: 5 gaattcagtcattttgtacattttgaacatgatttggccttctagaactcctgaattttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcagtcattttgtacattttgaacatgatttggccttctagaactcctgaattttc 250
Query: 65 atgtgtattttgagattctgttgttttgttttacagcagatgtctataatggacctgtac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtgtattttgagattctgttgttttgttttacagcagatgtctataatggacctgtac 310
Query: 125 ttgaatttagtaaatacaggaattttactagtaatatgctctttttgttttgatttatca 184
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 ttgaatttagtaaatacaggaattttactagtaatacgctctttttgttttgatttatca 370
Query: 185 aggtttgttaaatcaaatgagtctatgtaccatggtttttcttgagccagatgcaaggca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggtttgttaaatcaaatgagtctatgtaccatggtttttcttgagccagatgcaaggca 430
Query: 245 ataaacaaaaattaatttttattataattcctttaagacattaatatgtcaaattatttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ataaacaaaaattaatttttattataattcctttaagacattaatatgtcaaattatttt 490
Query: 305 caatatatcacatgaataaagaatatatttagtattggatattcacattttgtttt---- 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaatatatcacatgaataaagaatatatttagtattggatattcacattttgttttggtt 550
Query: 361 ----------taattgtgcactaagaattactatatcttttattaacatcatgaattcac 410
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atctatattttaattgtgcactaagaattactatatcttttattaacatcatgaattcac 610
Query: 411 tcagtatagggtaaaacatgttcacagcaggctaaccacatagaattttatataatatat 470
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 611 tcagtatagggtaaaacatgttcacaacaggctaaccacatagaattttatataatatat 670
Query: 471 tccttctcatagactgcttctttgcctaaattaattcacgcattatactctgttgcatta 530
|||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 671 tccttctcatagactg-ttctttgcctaaatgaattcacgcattatactctgctgcatta 729
Query: 531 tttagtgttctatttctgtgaagagaaaatgtaagcacaacaacttatagaaggaaatat 590
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttagtgttctatttctgtgaaaagaaaatgtaagcacaacaacttatagaaggaaatat 789
Query: 591 ttaattagtgggatagtacattatcatggaagtatggaatatattctttgatctgggctg 650
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttaattaatggggtagtacattatcatggaagtatggaatatattctttgatctgggctg 849
Query: 651 ccttgtctggcttcagtga 669
|||||||||||||||||||
Sbjct: 850 ccttgtctggcttcagtga 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space: 697222
Effective search space used: 697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_j04.g1 MSMg01no542_j04.g1 CHROMAT_FILE:
MSMg01no542_j04.g1 PHD_FILE: MSMg01no542_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:39 2005
(638 letters)
>mm_chr3_75986650_75987687
Length = 1038
Score = 1216 bits (629), Expect = 0.0
Identities = 635/637 (99%)
Strand = Plus / Minus
Query: 1 tactgggtactgtattatctaaaaataatcaatagaggatttttataaggatttactgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 693 tactgggtactgtattatctaaaaataatcaatagaggatttttataaggatttaatgtt 634
Query: 61 ccatttttatcatttacaatgtgatcaattacctatagatgccaccatcatgtcctagtc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 633 ccatttttatcatttacaatgtgatcaattacctataggtgccaccatcatgtcctagtc 574
Query: 121 tataattgctgaaaatatcagccagtattctttcagagtcatttttcaatttctaacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tataattgctgaaaatatcagccagtattctttcagagtcatttttcaatttctaacttc 514
Query: 181 tttcactctaagattttcctaaggcacacatgtaacctaagattcaggctagaatatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tttcactctaagattttcctaaggcacacatgtaacctaagattcaggctagaatatata 454
Query: 241 taatttagcttccatgactatgttagctcaatgaatattattcagagatgcaccacattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taatttagcttccatgactatgttagctcaatgaatattattcagagatgcaccacattg 394
Query: 301 ctacttcagtacatttcctgtgcatataagtggggatatatgcttgtggacatgaaagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctacttcagtacatttcctgtgcatataagtggggatatatgcttgtggacatgaaagag 334
Query: 361 agaagcagaaatatgataaagtcctatttgtgtacatattaaatggctttttaaagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agaagcagaaatatgataaagtcctatttgtgtacatattaaatggctttttaaagaaaa 274
Query: 421 agaaagaaatgacaatgaaagtaatttttaaatgtttgggaacacagatttttattatta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agaaagaaatgacaatgaaagtaatttttaaatgtttgggaacacagatttttattatta 214
Query: 481 tatttttctctgctaatataaattttatattaaagcccatacataaaatataaacatcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tatttttctctgctaatataaattttatattaaagcccatacataaaatataaacatcaa 154
Query: 541 gaatagatttgtatttagttgattttatatttctatacataaatatactgatatgctaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gaatagatttgtatttagttgattttatatttctatacataaatatactgatatgctaag 94
Query: 601 aactgtctttcatttgtagaaatattacatcttcaaa 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 93 aactgtctttcatttgtagaaatattacatcttcaaa 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|