BAC Information

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BAC

Clone NameMSMg01-542J04
Chromosome3 (Build37)
Map Location 75,842,329 - 75,987,342
singlet/doubletdoublet
Overlap geneFstl5
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542J04.T7 (MSMg01no542_j04.b1)MSMg01-542J04.TJ (MSMg01no542_j04.g1)
ACCAG608314AG608315
length732725
length of high quality
(start - end)
669 (53 - 721)638 (82 - 719)
definitionCHROMAT_FILE: MSMg01no542_j04.b1 PHD_FILE: MSMg01no542_j04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:39 2005CHROMAT_FILE: MSMg01no542_j04.g1 PHD_FILE: MSMg01no542_j04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,842,329 - 75,843,006)(75,986,706 - 75,987,342)
sequence
NNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGTCATTTTGTACATTTTGAACATGATTTGGCCTTCTA
GAACTCCTGAATTTTCATGTGTATTTTGAGATTCTGTTGTTTTGTTTTAC
AGCAGATGTCTATAATGGACCTGTACTTGAATTTAGTAAATACAGGAATT
TTACTAGTAATATGCTCTTTTTGTTTTGATTTATCAAGGTTTGTTAAATC
AAATGAGTCTATGTACCATGGTTTTTCTTGAGCCAGATGCAAGGCAATAA
ACAAAAATTAATTTTTATTATAATTCCTTTAAGACATTAATATGTCAAAT
TATTTTCAATATATCACATGAATAAAGAATATATTTAGTATTGGATATTC
ACATTTTGTTTTTAATTGTGCACTAAGAATTACTATATCTTTTATTAACA
TCATGAATTCACTCAGTATAGGGTAAAACATGTTCACAGCAGGCTAACCA
CATAGAATTTTATATAATATATTCCTTCTCATAGACTGCTTCTTTGCCTA
AATTAATTCACGCATTATACTCTGTTGCATTATTTAGTGTTCTATTTCTG
TGAAGAGAAAATGTAAGCACAACAACTTATAGAAGGAAATATTTAATTAG
TGGGATAGTACATTATCATGGAAGTATGGAATATATTCTTTGATCTGGGC
TGCCTTGTCTGGCTTCAGTGAGAGAAGATGTG
CCAAAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTGGGTACTGTATTATC
TAAAAATAATCAATAGAGGATTTTTATAAGGATTTACTGTTCCATTTTTA
TCATTTACAATGTGATCAATTACCTATAGATGCCACCATCATGTCCTAGT
CTATAATTGCTGAAAATATCAGCCAGTATTCTTTCAGAGTCATTTTTCAA
TTTCTAACTTCTTTCACTCTAAGATTTTCCTAAGGCACACATGTAACCTA
AGATTCAGGCTAGAATATATATAATTTAGCTTCCATGACTATGTTAGCTC
AATGAATATTATTCAGAGATGCACCACATTGCTACTTCAGTACATTTCCT
GTGCATATAAGTGGGGATATATGCTTGTGGACATGAAAGAGAGAAGCAGA
AATATGATAAAGTCCTATTTGTGTACATATTAAATGGCTTTTTAAAGAAA
AAGAAAGAAATGACAATGAAAGTAATTTTTAAATGTTTGGGAACACAGAT
TTTTATTATTATATTTTTCTCTGCTAATATAAATTTTATATTAAAGCCCA
TACATAAAATATAAACATCAAGAATAGATTTGTATTTAGTTGATTTTATA
TTTCTATACATAAATATACTGATATGCTAAGAACTGTCTTTCATTTGTAG
AAATATTACATCTTCAAAGCAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_j04.b1 MSMg01no542_j04.b1 CHROMAT_FILE:
MSMg01no542_j04.b1 PHD_FILE: MSMg01no542_j04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:39 2005
         (669 letters)



>mm_chr3_75842139_75843206
          Length = 1068

 Score = 1185 bits (613), Expect = 0.0
 Identities = 656/679 (96%), Gaps = 15/679 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcattttgtacattttgaacatgatttggccttctagaactcctgaattttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattcagtcattttgtacattttgaacatgatttggccttctagaactcctgaattttc 250

                                                                       
Query: 65  atgtgtattttgagattctgttgttttgttttacagcagatgtctataatggacctgtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 atgtgtattttgagattctgttgttttgttttacagcagatgtctataatggacctgtac 310

                                                                       
Query: 125 ttgaatttagtaaatacaggaattttactagtaatatgctctttttgttttgatttatca 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 ttgaatttagtaaatacaggaattttactagtaatacgctctttttgttttgatttatca 370

                                                                       
Query: 185 aggtttgttaaatcaaatgagtctatgtaccatggtttttcttgagccagatgcaaggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggtttgttaaatcaaatgagtctatgtaccatggtttttcttgagccagatgcaaggca 430

                                                                       
Query: 245 ataaacaaaaattaatttttattataattcctttaagacattaatatgtcaaattatttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ataaacaaaaattaatttttattataattcctttaagacattaatatgtcaaattatttt 490

                                                                       
Query: 305 caatatatcacatgaataaagaatatatttagtattggatattcacattttgtttt---- 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 491 aaatatatcacatgaataaagaatatatttagtattggatattcacattttgttttggtt 550

                                                                       
Query: 361 ----------taattgtgcactaagaattactatatcttttattaacatcatgaattcac 410
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 atctatattttaattgtgcactaagaattactatatcttttattaacatcatgaattcac 610

                                                                       
Query: 411 tcagtatagggtaaaacatgttcacagcaggctaaccacatagaattttatataatatat 470
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 611 tcagtatagggtaaaacatgttcacaacaggctaaccacatagaattttatataatatat 670

                                                                       
Query: 471 tccttctcatagactgcttctttgcctaaattaattcacgcattatactctgttgcatta 530
           |||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 671 tccttctcatagactg-ttctttgcctaaatgaattcacgcattatactctgctgcatta 729

                                                                       
Query: 531 tttagtgttctatttctgtgaagagaaaatgtaagcacaacaacttatagaaggaaatat 590
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 730 tttagtgttctatttctgtgaaaagaaaatgtaagcacaacaacttatagaaggaaatat 789

                                                                       
Query: 591 ttaattagtgggatagtacattatcatggaagtatggaatatattctttgatctgggctg 650
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttaattaatggggtagtacattatcatggaagtatggaatatattctttgatctgggctg 849

                              
Query: 651 ccttgtctggcttcagtga 669
           |||||||||||||||||||
Sbjct: 850 ccttgtctggcttcagtga 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1068
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1058
Effective search space:   697222
Effective search space used:   697222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no542_j04.g1 MSMg01no542_j04.g1 CHROMAT_FILE:
MSMg01no542_j04.g1 PHD_FILE: MSMg01no542_j04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:39 2005
         (638 letters)



>mm_chr3_75986650_75987687
          Length = 1038

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgggtactgtattatctaaaaataatcaatagaggatttttataaggatttactgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 693 tactgggtactgtattatctaaaaataatcaatagaggatttttataaggatttaatgtt 634

                                                                       
Query: 61  ccatttttatcatttacaatgtgatcaattacctatagatgccaccatcatgtcctagtc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 633 ccatttttatcatttacaatgtgatcaattacctataggtgccaccatcatgtcctagtc 574

                                                                       
Query: 121 tataattgctgaaaatatcagccagtattctttcagagtcatttttcaatttctaacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tataattgctgaaaatatcagccagtattctttcagagtcatttttcaatttctaacttc 514

                                                                       
Query: 181 tttcactctaagattttcctaaggcacacatgtaacctaagattcaggctagaatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tttcactctaagattttcctaaggcacacatgtaacctaagattcaggctagaatatata 454

                                                                       
Query: 241 taatttagcttccatgactatgttagctcaatgaatattattcagagatgcaccacattg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taatttagcttccatgactatgttagctcaatgaatattattcagagatgcaccacattg 394

                                                                       
Query: 301 ctacttcagtacatttcctgtgcatataagtggggatatatgcttgtggacatgaaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctacttcagtacatttcctgtgcatataagtggggatatatgcttgtggacatgaaagag 334

                                                                       
Query: 361 agaagcagaaatatgataaagtcctatttgtgtacatattaaatggctttttaaagaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agaagcagaaatatgataaagtcctatttgtgtacatattaaatggctttttaaagaaaa 274

                                                                       
Query: 421 agaaagaaatgacaatgaaagtaatttttaaatgtttgggaacacagatttttattatta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agaaagaaatgacaatgaaagtaatttttaaatgtttgggaacacagatttttattatta 214

                                                                       
Query: 481 tatttttctctgctaatataaattttatattaaagcccatacataaaatataaacatcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tatttttctctgctaatataaattttatattaaagcccatacataaaatataaacatcaa 154

                                                                       
Query: 541 gaatagatttgtatttagttgattttatatttctatacataaatatactgatatgctaag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gaatagatttgtatttagttgattttatatttctatacataaatatactgatatgctaag 94

                                                
Query: 601 aactgtctttcatttgtagaaatattacatcttcaaa 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 93  aactgtctttcatttgtagaaatattacatcttcaaa 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)