BAC Information

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BAC

Clone NameMSMg01-542L05
Chromosome3 (Build37)
Map Location 131,597,955 - 131,794,380
singlet/doubletdoublet
Overlap geneDkk2
Upstream geneLOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneLOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542L05.T7 (MSMg01no542_l05.b1)MSMg01-542L05.TJ (MSMg01no542_l05.g1)
ACCAG608412AG608413
length769748
length of high quality
(start - end)		666 (46 - 711)665 (76 - 740)
definitionCHROMAT_FILE: MSMg01no542_l05.b1 PHD_FILE: MSMg01no542_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:49 2005CHROMAT_FILE: MSMg01no542_l05.g1 PHD_FILE: MSMg01no542_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:49 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(131,597,955 - 131,598,409)(131,793,716 - 131,794,380)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCAGCATCCCAACATACTGCAGAAACAGCAGACAGCCTCACCG
CTGTTTATCATCAGGTCTATTTGGTATAAAACTACCTGTGGTGCTTCACT
GTCAATTTCTTCAGGAACCACTCTCCAAAAATTAAAAGCCAACCAACCAA
CCAATCAACCAACCAACCAACCAACCAACCACCCACCAACCAACCAACTT
AAGTTCTTTTGCTTTTAAAGTTTTGATGAGGAATTTGAGGAAACGAACTC
AAAATAACCTAAGGTCCTGACAGCAGTTCATTTTTGAAGCAGCAGCCGGG
GCATCTTAGCTTCTGCCTACATTTCAACAGGGGATGCAGTTACTACTCTT
GTGCACAATCTGTGCTCATAAGTTTGAAAGAACCATGAGACCCTTTGGGA
AGCGGGGAATAAGGAAAGAATTGAAGAACGAGTGGGATAAATCCTATGAC
GCAGAAAAGAAAGTGGAATGGTAGCAGAATGGACCAGTTTCTAGTGAACC
TGAAGACCAGAATAATTATACACTCCAGGGAAAAAGAGTCTAATATAGGA
GGGTTGAATCTTTCTGATGAGTAATTGTGTTTTCTAACCCTTGCAAAAGC
TATAAGGAGGGATGAGATGAATTTCCCCCATCATTCCTCAACACCTCCCT
CCTCCTCTCAGAACATCGCTGAGAAGGGCATGTAGATGAACTTACTGAAA
GCGAATGGCCTCTCAGTTG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCCTTGCTCATGTCACCTGATA
CCTTCTTTGAAAACCTGTCTGAAACCTTGTATCATTATCAGTAGAGCATC
CAATCTTTTCCTGTCACGACCAAGAAAGCCATGCAAAACCCTCAACTAAC
CACTAGGACTCCAGAGGATTTGTGTGTTGAGTAAAGAGGCCGGGATTGTA
ACTGCACCCCAATAATGACAATGGATTTTTGGTCTCTCCTAAAGCTCCAT
GAAGTCATAACCTTTCAAGGTGAAGTTGGTTTTCTATCTGAATTTTATCT
TGGAGCTTCTTCATATGCTTACACTCAGTTCTTATTTAAAAAAAATTGAT
CACTTATGAGTTGATCTCTCTGTCCTATACCTCAAAACATAACTGACATG
AAGTAACCTACTTCATGCAGATAATTTACCAGAGATGTGATGCAATACAG
AAAGTAGAGCACAGTCACAGAGCTGAACTCCGACCAGTCTGACCTGAAGC
TTTGGCTTTAAGCTCTGTGTGCCATTTTTCTATTTCAGAGGAGTTTCAAA
ATGAGCATACCTAGGTCACTACAGAGGAAATATTAGACTAGATGCAAAAC
ATAAAATGCAGACACTAAAAAGTACATCTTGCCTTGTGATACTCAATGAC
TCGGCCAGCATTTATTTTATACACAAAGGATCCCCTGCAATAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_l05.b1 MSMg01no542_l05.b1 CHROMAT_FILE:
MSMg01no542_l05.b1 PHD_FILE: MSMg01no542_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:49 2005
         (666 letters)



>mm_chr3_131597544_131598609
          Length = 1066

 Score =  841 bits (435), Expect = 0.0
 Identities = 450/455 (98%)
 Strand = Plus / Plus

                                                                       
Query: 212 ttttgcttttaaagttttgatgaggaatttgaggaaacgaactcaaaataacctaaggtc 271
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 412 ttttgcttttaaagttttgatgaggaatttgagggaacgaactcaaaataacctaaggtc 471

                                                                       
Query: 272 ctgacagcagttcatttttgaagcagcagccggggcatcttagcttctgcctacatttca 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgacagcagttcatttttgaagcagcagccggggcatcttagcttctgcctacatttca 531

                                                                       
Query: 332 acaggggatgcagttactactcttgtgcacaatctgtgctcataagtttgaaagaaccat 391
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 acaggtgatgcagttactactcttgtgcacaatctgtgctcataagtttgaaagaaccat 591

                                                                       
Query: 392 gagaccctttgggaagcggggaataaggaaagaattgaagaacgagtgggataaatccta 451
           |||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gagaccctctgggaagcagggcataaggaaagaattgaagaacgagtgggataaatccta 651

                                                                       
Query: 452 tgacgcagaaaagaaagtggaatggtagcagaatggaccagtttctagtgaacctgaaga 511
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgacgcagaaaagaaagtggaatggtagcagaatggaccagtttctagtgaacctgaaga 711

                                                                       
Query: 512 ccagaataattatacactccagggaaaaagagtctaatataggagggttgaatctttctg 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ccagaataattatacactccagggaaaaagagtctaatataggagggttgaatctttctg 771

                                                                       
Query: 572 atgagtaattgtgttttctaacccttgcaaaagctataaggagggatgagatgaatttcc 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 atgagtaattgtgttttctaacccttgcaaaagctataaggagggatgagatgaatttcc 831

                                              
Query: 632 cccatcattcctcaacacctccctcctcctctcag 666
           |||||||||||||||||||||||||||||||||||
Sbjct: 832 cccatcattcctcaacacctccctcctcctctcag 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_l05.g1 MSMg01no542_l05.g1 CHROMAT_FILE:
MSMg01no542_l05.g1 PHD_FILE: MSMg01no542_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:49 2005
         (665 letters)



>mm_chr3_131793516_131794580
          Length = 1065

 Score = 1278 bits (661), Expect = 0.0
 Identities = 664/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttccttgctcatgtcacctgataccttctttgaaaacctgtctgaaaccttgtatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctttccttgctcatgtcacctgataccttctttgaaaacctgtctgaaaccttgtatcat 806

                                                                       
Query: 61  tatcagtagagcatccaatcttttcctgtcacgaccaagaaagccatgcaaaaccctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tatcagtagagcatccaatcttttcctgtcacgaccaagaaagccatgcaaaaccctcaa 746

                                                                       
Query: 121 ctaaccactaggactccagaggatttgtgtgttgagtaaagaggccgggattgtaactgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctaaccactaggactccagaggatttgtgtgttgagtaaagaggccgggattgtaactgc 686

                                                                       
Query: 181 accccaataatgacaatggatttttggtctctcctaaagctccatgaagtcataaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accccaataatgacaatggatttttggtctctcctaaagctccatgaagtcataaccttt 626

                                                                       
Query: 241 caaggtgaagttggttttctatctgaattttatcttggagcttcttcatatgcttacact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaggtgaagttggttttctatctgaattttatcttggagcttcttcatatgcttacact 566

                                                                       
Query: 301 cagttcttatttaaaaaaaattgatcacttatgagttgatctctctgtcctatacctcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagttcttatttaaaaaaaattgatcacttatgagttgatctctctgtcctatacctcaa 506

                                                                       
Query: 361 aacataactgacatgaagtaacctacttcatgcagataatttaccagagatgtgatgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 aacataactgacatgaagtaacctacttcatgcagataatttaccagagatgtgacgcaa 446

                                                                       
Query: 421 tacagaaagtagagcacagtcacagagctgaactccgaccagtctgacctgaagctttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tacagaaagtagagcacagtcacagagctgaactccgaccagtctgacctgaagctttgg 386

                                                                       
Query: 481 ctttaagctctgtgtgccatttttctatttcagaggagtttcaaaatgagcatacctagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctttaagctctgtgtgccatttttctatttcagaggagtttcaaaatgagcatacctagg 326

                                                                       
Query: 541 tcactacagaggaaatattagactagatgcaaaacataaaatgcagacactaaaaagtac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcactacagaggaaatattagactagatgcaaaacataaaatgcagacactaaaaagtac 266

                                                                       
Query: 601 atcttgccttgtgatactcaatgactcggccagcatttattttatacacaaaggatcccc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcttgccttgtgatactcaatgactcggccagcatttattttatacacaaaggatcccc 206

                
Query: 661 tgcaa 665
           |||||
Sbjct: 205 tgcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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