BAC Information

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BAC

Clone NameMSMg01-542M05
Chromosome3 (Build37)
Map Location 36,774,028 - 36,927,561
singlet/doubletdoublet
Overlap gene4932438A13Rik
Upstream geneDcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Downstream geneTenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542M05.T7 (MSMg01no542_m05.b1)MSMg01-542M05.TJ (MSMg01no542_m05.g1)
ACCAG608459AG608460
length763763
length of high quality
(start - end)		690 (44 - 733)692 (72 - 763)
definitionCHROMAT_FILE: MSMg01no542_m05.b1 PHD_FILE: MSMg01no542_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:54 2005CHROMAT_FILE: MSMg01no542_m05.g1 PHD_FILE: MSMg01no542_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,926,876 - 36,927,561)(36,774,028 - 36,774,719)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAAGGATTCTTATATCTTTGTGTCTGCATGCCCGTGCATGCGTGCA
TGCATGTGTGTGTGTACGTACATACTACTACTGGGGATTAAATCCTGTGC
TTATACAATATATACACAATCTACCAATGAGCTAAAATACCTGGTCTATA
GATCTATTTTAATTAACAATTTTACCAGATTCTAAATCAGCTATCTGCTT
CTAATTGCCATAAAAGATATATTTATTTTAACAAACTGTGTTATGCAAAT
GAATACTGTAACTTCAACTAGTTACTTTTAAATTTTGCGGTGTTGGATGG
GGAACATTTGTGATAAATCATGATATATGGACAGTGTTTCTAACTAATGA
ACCCCATATAACTTTTCCAGCTGTCTCTTACCTTCTTAAACTTATGTCAT
CATGCTCCTGCAGAAGGGTAGTGGGGTGAAGGACACATTTTCCACTGTCA
ATTTCAACTCGTATATCAAGCTCAAAGTCAATATTTCTCTCAGTAGCTGT
GCCACTAAGACTTCGATTGACTGGGGTTGTAGGCCAGCGTTCAGTAAGTA
GCTGATGAACAGCAGCAAAGCCTGTTGCTTTCTTCCGAGAGGTATGTCTG
CAGAAAACAAGGAATTACTCATTATAGTAAATTGAAGTCTGCTTAGTGAA
CTATTTCCCAGTGTTATATGAATAAGTCTTTAAAGAAATTTCTTAATTTA
TAAGCTCATAGAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGGGGGCTGGAGAGATGGCTCAGTGGT
TAAGAGCACTGATTGCTCTTCCCAAGGTCCTGAGTTCAATTCCCAGCAAC
CACATGATGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGG
TGTGTCTGAGAGAGCACTGGTGTACTCATAGACATAAAATAAATAAGTAA
ATCTTAAAAAAAAATTAGCTAAAAAAAAGAATTGCAAGTATATGGAGAAT
AGAATGGGAAAAGATTAATTATTTATTAAAGGCTAGGATTCATCTAAGTT
CTTAATCCTCTAGTGTGCATTAAAAGAATTGCTGTATTTAATTATCATTG
TGTTTTTCCTAACAGGTTCTTTCTCTTTCTCTGTTCTTTCTGGAAAAGTC
ATGGTTCGTGAAATATATTACATTACAGAAGACATGTCTATTAGGTAATG
AAAAGTGAAAAGAGACCCAAACAAATGTGAAATATAAAAATGATTTTATT
TAATGACTTATACATTCAAATAAGCCATAAAAGGTTTTTTTTCAGTAATG
TTTAAAAATTATTTTTGCCAATGAGTTAATTTGGTTTAGTTAATTTAGAC
TAGGAAAAATTTTTCTTAGCTGGCAGTTTATAGAAGTGAATAATTGCATT
TGATTTGTAGCTGAAAAATTGAACCATTGATGGACCTGCCATTTCAATGG
TGGTTACATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_m05.b1 MSMg01no542_m05.b1 CHROMAT_FILE:
MSMg01no542_m05.b1 PHD_FILE: MSMg01no542_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:54 2005
         (690 letters)



>mm_chr3_36926672_36927761
          Length = 1090

 Score = 1326 bits (686), Expect = 0.0
 Identities = 686/686 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaaaggattcttatatctttgtgtctgcatgcccgtgcatgcgtgcatgcatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gaattccaaaggattcttatatctttgtgtctgcatgcccgtgcatgcgtgcatgcatgt 831

                                                                       
Query: 65  gtgtgtgtacgtacatactactactggggattaaatcctgtgcttatacaatatatacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtgtgtgtacgtacatactactactggggattaaatcctgtgcttatacaatatatacac 771

                                                                       
Query: 125 aatctaccaatgagctaaaatacctggtctatagatctattttaattaacaattttacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 aatctaccaatgagctaaaatacctggtctatagatctattttaattaacaattttacca 711

                                                                       
Query: 185 gattctaaatcagctatctgcttctaattgccataaaagatatatttattttaacaaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gattctaaatcagctatctgcttctaattgccataaaagatatatttattttaacaaact 651

                                                                       
Query: 245 gtgttatgcaaatgaatactgtaacttcaactagttacttttaaattttgcggtgttgga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtgttatgcaaatgaatactgtaacttcaactagttacttttaaattttgcggtgttgga 591

                                                                       
Query: 305 tggggaacatttgtgataaatcatgatatatggacagtgtttctaactaatgaaccccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tggggaacatttgtgataaatcatgatatatggacagtgtttctaactaatgaaccccat 531

                                                                       
Query: 365 ataacttttccagctgtctcttaccttcttaaacttatgtcatcatgctcctgcagaagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ataacttttccagctgtctcttaccttcttaaacttatgtcatcatgctcctgcagaagg 471

                                                                       
Query: 425 gtagtggggtgaaggacacattttccactgtcaatttcaactcgtatatcaagctcaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtagtggggtgaaggacacattttccactgtcaatttcaactcgtatatcaagctcaaag 411

                                                                       
Query: 485 tcaatatttctctcagtagctgtgccactaagacttcgattgactggggttgtaggccag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tcaatatttctctcagtagctgtgccactaagacttcgattgactggggttgtaggccag 351

                                                                       
Query: 545 cgttcagtaagtagctgatgaacagcagcaaagcctgttgctttcttccgagaggtatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cgttcagtaagtagctgatgaacagcagcaaagcctgttgctttcttccgagaggtatgt 291

                                                                       
Query: 605 ctgcagaaaacaaggaattactcattatagtaaattgaagtctgcttagtgaactatttc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctgcagaaaacaaggaattactcattatagtaaattgaagtctgcttagtgaactatttc 231

                                     
Query: 665 ccagtgttatatgaataagtctttaa 690
           ||||||||||||||||||||||||||
Sbjct: 230 ccagtgttatatgaataagtctttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_m05.g1 MSMg01no542_m05.g1 CHROMAT_FILE:
MSMg01no542_m05.g1 PHD_FILE: MSMg01no542_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:54 2005
         (692 letters)



>mm_chr3_36773828_36774919
          Length = 1092

 Score = 1338 bits (692), Expect = 0.0
 Identities = 692/692 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagggggctggagagatggctcagtggttaagagcactgattgctcttcccaaggtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagggggctggagagatggctcagtggttaagagcactgattgctcttcccaaggtcct 260

                                                                       
Query: 61  gagttcaattcccagcaaccacatgatggctcacaaccatctgtaatgggatctgatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttcaattcccagcaaccacatgatggctcacaaccatctgtaatgggatctgatgcc 320

                                                                       
Query: 121 ctcttctggtgtgtctgagagagcactggtgtactcatagacataaaataaataagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttctggtgtgtctgagagagcactggtgtactcatagacataaaataaataagtaaa 380

                                                                       
Query: 181 tcttaaaaaaaaattagctaaaaaaaagaattgcaagtatatggagaatagaatgggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttaaaaaaaaattagctaaaaaaaagaattgcaagtatatggagaatagaatgggaaa 440

                                                                       
Query: 241 agattaattatttattaaaggctaggattcatctaagttcttaatcctctagtgtgcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattaattatttattaaaggctaggattcatctaagttcttaatcctctagtgtgcatt 500

                                                                       
Query: 301 aaaagaattgctgtatttaattatcattgtgtttttcctaacaggttctttctctttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaagaattgctgtatttaattatcattgtgtttttcctaacaggttctttctctttctc 560

                                                                       
Query: 361 tgttctttctggaaaagtcatggttcgtgaaatatattacattacagaagacatgtctat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttctttctggaaaagtcatggttcgtgaaatatattacattacagaagacatgtctat 620

                                                                       
Query: 421 taggtaatgaaaagtgaaaagagacccaaacaaatgtgaaatataaaaatgattttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggtaatgaaaagtgaaaagagacccaaacaaatgtgaaatataaaaatgattttattt 680

                                                                       
Query: 481 aatgacttatacattcaaataagccataaaaggttttttttcagtaatgtttaaaaatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatgacttatacattcaaataagccataaaaggttttttttcagtaatgtttaaaaatta 740

                                                                       
Query: 541 tttttgccaatgagttaatttggtttagttaatttagactaggaaaaatttttcttagct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttttgccaatgagttaatttggtttagttaatttagactaggaaaaatttttcttagct 800

                                                                       
Query: 601 ggcagtttatagaagtgaataattgcatttgatttgtagctgaaaaattgaaccattgat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcagtttatagaagtgaataattgcatttgatttgtagctgaaaaattgaaccattgat 860

                                           
Query: 661 ggacctgccatttcaatggtggttacatgaaa 692
           ||||||||||||||||||||||||||||||||
Sbjct: 861 ggacctgccatttcaatggtggttacatgaaa 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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