Query= MSMg01no543_a13.b1 MSMg01no543_a13.b1 CHROMAT_FILE:
MSMg01no543_a13.b1 PHD_FILE: MSMg01no543_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:16 2005
(610 letters)
>mm_chr3_28164451_28165460
Length = 1010
Score = 1149 bits (594), Expect = 0.0
Identities = 602/608 (99%), Gaps = 6/608 (0%)
Strand = Plus / Minus
Query: 9 ggaattctgattatttcctaatcataaaccccacttcattttagt------caaaaacaa 62
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 911 ggaattctgattatttcctaatcataaaccccacttcattttagtcaaaaacaaaaacaa 852
Query: 63 aaacaaaaacaaaaccaccactaccaccaccaccacaacaacaaaatcccacccatattt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aaacaaaaacaaaaccaccactaccaccaccaccacaacaacaaaatcccacccatattt 792
Query: 123 tgcatggcttaaatgacagggctggtactggttgctctggtttgaattatgcattgttcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgcatggcttaaatgacagggctggtactggttgctctggtttgaattatgcattgttcc 732
Query: 183 aattggggagaatttcagactaggcccagtctgggatcactgactgagaacaataagccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aattggggagaatttcagactaggcccagtctgggatcactgactgagaacaataagccc 672
Query: 243 ccaaaatcagaaggagaaaggcctctctagacaggatctgcttttaaaccaccaagccca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ccaaaatcagaaggagaaaggcctctctagacaggatctgcttttaaaccaccaagccca 612
Query: 303 gggcttacaaagagcattgattgtatacattaaagagccacagggatgtcgaggggctga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gggcttacaaagagcattgattgtatacattaaagagccacagggatgtcgaggggctga 552
Query: 363 cagggctgcaccactgaccttgcctgcaattcagggtcagggtttcctcagaaggacttc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cagggctgcaccactgaccttgcctgcaattcagggtcagggtttcctcagaaggacttc 492
Query: 423 tctgcaagcttaggaaccaacctctccaaatctgggaaggcagccaccatctacgcttcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tctgcaagcttaggaaccaacctctccaaatctgggaaggcagccaccatctacgcttcc 432
Query: 483 atttgtgggcatcacctactggccctcggagacaaacggacctgcacacctagcctacca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atttgtgggcatcacctactggccctcggagacaaacggacctgcacacctagcctacca 372
Query: 543 caagactgcctgacgctcccaggcctgctgagtacaactgtctgcccatctgcatgtaag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caagactgcctgacgctcccaggcctgctgagtacaactgtctgcccatctgcatgtaag 312
Query: 603 tcttccag 610
||||||||
Sbjct: 311 tcttccag 304
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_a13.g1 MSMg01no543_a13.g1 CHROMAT_FILE:
MSMg01no543_a13.g1 PHD_FILE: MSMg01no543_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:16 2005
(568 letters)
>mm_chr3_28007672_28008639
Length = 968
Score = 986 bits (510), Expect = 0.0
Identities = 556/576 (96%), Gaps = 10/576 (1%)
Strand = Plus / Plus
Query: 1 aatctccaggattcacatggtagaaagagacaagtgagtctcacaagttgttttcgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 195 aatctccaggattcacatggtagaaagagacaagtgagtctcacaagttgttttc--ata 252
Query: 61 ctctctctctctctctctctctctctctct----ctctcacacacacacatacacataca 116
|||||||||||||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct: 253 ctctctctctctctctctctctctctctctcacacacacacacacacacacacacataca 312
Query: 117 cacacctgtgcataaatgttttaaaaataaaataaaaaataacaactagtcactcagaat 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cacacctgtgcataaatgttttaaaaataaaataaaaaataacaactagtcactcagaat 372
Query: 177 tcttgaagaattcccagtaacattctctggctggaaccttagcattcctaaataccgatg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tcttgaagaattcccagtaacattctctggctggaaccttagcattcctaaataccgatg 432
Query: 237 actctgttttgaaaaacatactgaatcctatgtgtatatttgcttctaagacataggtac 296
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 433 actctgttttgaaaaacatactgaatcttatgtgtatatttgcttctaagacataggtac 492
Query: 297 cggtacccccacagttatgaatcaaatgcccacaatttgccaagctgtggactgcataac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cggtacccccacagttatgaatcaaatgcccacaatttgccaagctgtggactgcataac 552
Query: 357 ttaatagtaattatgtatatatat----gtctatgtatctatgtctgcacatatggatac 412
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 553 ttaatagtaattatgtatatatatatatgtctatgtatctatgtctgcacatatggatac 612
Query: 413 acatatttaaataaaatccgatttataattacatagtctcattatggtaacacccttttc 472
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 613 acatatttaaataaaatcctatttaaaattacatagtctcattatggtaacacccttttc 672
Query: 473 taaactttggtataagtcacttcctacaccctctttcatgagataagcaagatttatttt 532
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 673 taaactttggtataagtcacttcctacaccctctttcatgagatcagcaagatttatttt 732
Query: 533 aaactgccttctgtcctgcaaaggataatgaatgga 568
|||||||||||||||||||||||||| |||||||||
Sbjct: 733 aaactgccttctgtcctgcaaaggatgatgaatgga 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
