Query= MSMg01no543_b04.b1 MSMg01no543_b04.b1 CHROMAT_FILE:
MSMg01no543_b04.b1 PHD_FILE: MSMg01no543_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
(696 letters)
>mm_chr3_47011760_47012855
Length = 1096
Score = 1286 bits (665), Expect = 0.0
Identities = 688/699 (98%), Gaps = 6/699 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttgataaaattaaccaacattatcaggtctaaatgaggaagactcaaaactg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttgataaaattaaccaacattatcaggtctaaatgaggaagactcaaaactg 263
Query: 64 ggaacaaagagtagactaatggttcttcaactcagaacgtttactttagagagaacctga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggaacaaagagtagactaatggttcttcaactcagaacgtttactttagagagaacctga 323
Query: 124 gttagattagcactacccgggtagagttgctcatagtttctcataactctagttcctagg 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttagattagcactacccaggtagagttgctcatagtttctcataactctagttcctagg 383
Query: 184 aatatgatatcttcttctagtctctggggccatctacataaatatgcatatacccatata 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 384 aatatgatatcttcttctagtctctggggccatctacaaaaatatgcatatacccatata 443
Query: 244 catgtatacataggccaaataattaaattatttcagtatacagaagaacagaaatagata 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgtatacataggccaaataattaaattatttcagtatacagaagaacagaaatagata 503
Query: 304 attatattagttgggttttattttaaaaatcaaaataaataattaaccaaactatttctc 363
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 504 attatattagttgggttttattttaaaaatcaaaataaataattaaacaaactatttctc 563
Query: 364 tataatttgatgtatatgtaagcattagaaagctcaaatatccaaatggaaacaaaagtg 423
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 564 tataatttgatgtatatgtaagcattagaaagctcaaatatctaaatggaaacaaaagtg 623
Query: 424 tctttttcattttatttattatataatggtttgatgagtaatatgtatgtgaaaaaataa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctttttcattttatttattatataatggtttgatgagtaatatgtatgtgaaaaaataa 683
Query: 484 tgggataaatactttatgtacatagtgataaaccagtttcaatt------aaaaaaaaca 537
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 tgggataaatactttatgtacatagtgataaaccagtttcaatttaaaaaaaaaaaaaca 743
Query: 538 cattttcaaataacatccttcaattgtgtttgggaaatcctcttgttcacactttcatgt 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cattttcaaataacatccttcaattgtgtttgggaaatcctcttgttcacactttcatgt 803
Query: 598 taaaccaagtataatttttgaaactcatattactaaaatgaacttaaaataattgtattt 657
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 804 taaaccaagtataatttttgaaactcatattactaaaatgaactttaaataattgtattt 863
Query: 658 atggattctctaattctattctaaatacatacttatata 696
|||||||||||||||||||||||||||||||||||||||
Sbjct: 864 atggattctctaattctattctaaatacatacttatata 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space: 744996
Effective search space used: 744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_b04.g1 MSMg01no543_b04.g1 CHROMAT_FILE:
MSMg01no543_b04.g1 PHD_FILE: MSMg01no543_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:19 2005
(665 letters)
>mm_chr3_47183696_47184762
Length = 1067
Score = 843 bits (436), Expect = 0.0
Identities = 474/488 (97%), Gaps = 8/488 (1%)
Strand = Plus / Minus
Query: 2 tccatgggcttattaaaacttacaagtcctaaaaatttgggaaattccttttgaaaatta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccatgggcttattaaaacttacaagtcctaaaaatttgggaaattccttttgaaaatta 428
Query: 62 tctattatttgtctttggttatttctttattgctacaagctgagttataggccaaaggaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tctattatttgtctttggttatttctttattgctacaagctgagttataggccaaaggaa 368
Query: 122 tgagtttgctcc-aaatgtcaaaaactgccaatggttctaaaattgaaagaagaaaataa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgagtttgctccaaaatgtcaaaaactgccaatggttctaaaattgaaagaagaaaataa 308
Query: 181 taatgagaagcaaaaagcatttaagaaaataaccatcgtgggaaggcagcatatctg-ag 239
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct: 307 taatgagaagcaaaaagcatttaagaaaatgaccatcgtggaaaggcagcatatctgaag 248
Query: 240 atgctttgaattgttctgacatgagctttacaaaacagcttgcagccttgcttacttgtc 299
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgctttgaattgttctcacttgagctttacaaaacagcttgcagccttgcttacttgtc 188
Query: 300 tgcttgcttgcttgcttgcttgcttgcttgcttgcttgcttccttccttccttccttcct 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 187 tgcttgcttgcttgcttgcttgcttgcttgcttgcttccttccttccttccttccttcct 128
Query: 360 tccttccttccttccttccttctttcccttcttccttagttttctttctttctttctttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccttccttccttccttccttctttcccttcttccttagttttctttctttctttctttc 68
Query: 420 ttttc-ttctttctttctttctttctttctttctttctttctttctttccttc---c-tt 474
|||| ||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 67 -tttctttctttctttctttctttctttctttctttctttctttctttctttctttcgtt 9
Query: 475 ctaacctt 482
||||||||
Sbjct: 8 ctaacctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 89
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1067
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1057
Effective search space: 692335
Effective search space used: 692335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
