Query= MSMg01no543_g14.b1 MSMg01no543_g14.b1 CHROMAT_FILE:
MSMg01no543_g14.b1 PHD_FILE: MSMg01no543_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(658 letters)
>mm_chr3_104595492_104596549
Length = 1058
Score = 905 bits (468), Expect = 0.0
Identities = 477/480 (99%), Gaps = 1/480 (0%)
Strand = Plus / Minus
Query: 179 tctggtggcgctcagccttctagtgctgcaaccctctaatacagttcctcatgttgtggg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 tctggtggcgctcagccttctagtgctgcaaccctctaatacagttcctcatgttgtggg 999
Query: 239 gacaccccccccactataaaattatttttgttgctacctcataactgtagttttgctact 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 gaca-cccccccactataaaattatttttgttgctacctcataactgtagttttgctact 940
Query: 299 gttatgaatcgtgatgtaaatacctaatatgcaggatatctaacatgcagccccaaaggg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gttatgaatcgtgatgtaaatacctaatatgcaggatatctaacatgcagccccaaaggg 880
Query: 359 gtcatgacccacaggctgagactgttctcgtctatactacatagctaccagagtactttt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gtcatgacccacaggctgagactgttctcgtctatactacatagctaccagagtactttt 820
Query: 419 actaacagagactgaacccccacctaaagccttaattagcctcccaagatagcctacctt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 actaacagagactgaacccccacctaaagccttaattagcctcccaagatagcctacctt 760
Query: 479 cccctaagtaaaacagtccactggctagagttatttagcaagtcctcgagtactcacccc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cccctaagtaaaacagtccactggctagagttatttagcaagtcctcgagtactcacccc 700
Query: 539 tctgagccttctctcagcagtgtataatgccctccctccccagggaactcttaacacaca 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tctgagccttctcccagcagtgtataatgccctccctccccagggaactcttaacacaca 640
Query: 599 gcccccacaccctcgggcaagacgcttctctgatacttcagttacttgggggcccttcta 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gcccccacaccctcgggcaagtcgcttctctgatacttcagttacttgggggcccttcta 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_g14.g1 MSMg01no543_g14.g1 CHROMAT_FILE:
MSMg01no543_g14.g1 PHD_FILE: MSMg01no543_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:46 2005
(530 letters)
>mm_chr3_104370676_104371605
Length = 930
Score = 982 bits (508), Expect = 0.0
Identities = 526/534 (98%), Gaps = 5/534 (0%)
Strand = Plus / Plus
Query: 1 actttgtagaccaggctggccttgaactcacagagatacacttgctaactcacagagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 actttgtagaccaggctggccttgaactcacagagatacacttgctaactcacagagata 257
Query: 61 cacttgctcctgcctcctgaatgctgggattaaaagtatttgccaccatgcatagccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cacttgctcctgcctcctgaatgctgggattaaaagtatttgccaccatgcatagccaat 317
Query: 121 taaattttttaaaaaagaatttcccactaattcaaaaattttaaatgtatgtaccatacc 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 taaattttttaaaaaagaatttcccactaattcaaaaatttaaaatgtatgtaccatacc 377
Query: 181 tataaataaaatataaatacaaaacatttaaagagatagtaaatgctgtaaaacgacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tataaataaaatataaatacaaaacatttaaagagatagtaaatgctgtaaaacgacttt 437
Query: 241 aaaaacaaacaaacagaca----gtggcttgaagttgagtgtgtaccacgtagctgtaat 296
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaacaaacaaacaaacaaacagtggcttgaagttgagtgtgtaccacgtagctgtaat 497
Query: 297 tctagccctcagcagctgaggcagaaggattgcttaggagttagaggctagcctgggcta 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 tctagccctcagcagctgaggcaga-ggattgcttaggagttagaggctagcctgggcta 556
Query: 357 ttgtagtaagaccctgggtctaatagacagacagacaaacaatcaagcaaaaaatactgg 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 ttgtagtaagaccctgggtctaatagacagacagacaaacaatcaagcaaaatatactgg 616
Query: 417 gctgaagttgactttcaatcttctgttggcctctccctagagaagcatataaatacctag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gctgaagttgactttcaatcttctgttggcctctccctagagaagcatataaatacctag 676
Query: 477 tgaggtgacttactataataataattattctagtttatttatattttgagatgc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgaggtgacttactataataataattattctagtttatttatattttgagatgc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
