Query= MSMg01no543_h15.b1 MSMg01no543_h15.b1 CHROMAT_FILE:
MSMg01no543_h15.b1 PHD_FILE: MSMg01no543_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:52 2005
(663 letters)
>mm_chr3_68680248_68681310
Length = 1063
Score = 1125 bits (582), Expect = 0.0
Identities = 633/660 (95%), Gaps = 18/660 (2%)
Strand = Plus / Minus
Query: 5 gaattcatgaaagatccagttctcagagctcccacaacacttaaaaagagattgtgtggt 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 670 gaattcatgaaagacccagttctcagagctcccacaacacttaaaaagagatcgcgtggt 611
Query: 65 gataatgtctatagaaagataaagaattttgtgctccgtgttttccagacctccaaatca 124
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 610 gataatgtctatagaaaaataaagaattttgtgcttcgtgttttccagacctccaaatca 551
Query: 125 gaactacaaggcttctagggacaactggaaaaatgcagtaaaaaagatcaaaaaaggtac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gaactacaaggcttctagggacaactggaaaaatgcagtaaaaaagatcaaaaaaggtac 491
Query: 185 taaacaacttattaaagtcccaaaacaagctgaagcactaagggcttcctatctcccaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 taaacaacttattaaagtcccaaaacaagctgaagcactaagggcttcctatctcccaaa 431
Query: 245 tggagatgtgtgaaaagccaatcatcacccaggagtttgtttaggctgctcaaaaagaag 304
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 430 tggagatgtgtgaaaagccaatcctcacccaggagtttgtttaggctgctcaaaaagaag 371
Query: 305 gcagaacctaggaagacagcagaaaccagattctaaaacaaaagtgtcctccatttgaaa 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 370 gcagaacctaggaagacagcagaaagcagattctaaaacaaaagtgtcctccatttgaaa 311
Query: 365 acaaccccatctcaggctaactagtgcttcc-agcttcctgtaaccaatactttcaactt 423
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 310 acaaccccatctcaggctaactagtgcttccga-cttcctgtaaccaatactttcaactt 252
Query: 424 cccaaagtcaataccacaaaaagccttccttacctctgccctcttgcctccctatggacc 483
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 251 cccaaagtcaataccacaaaaagccttctttatctctgccctcttgcctccctatggacc 192
Query: 484 tatggggccatttttattcaaaccatcacattgaccatctatattagtgattatttaata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tatggggccatttttattcaaaccatcacattgaccatctatattagtgattatttaata 132
Query: 544 cactgaccacctacaacactgaccacttataacattggccataaaaatactaaccatcta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cactgaccacctacaacactgaccacttataacattggccataaaaatactaaccatcta 72
Query: 604 cattagccatctaaaacattggccatctacaacattttaaaataaaggaaacccttgagc 663
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 71 cattagccatctaa----------------aacattttaaaataaaggaaacccttgagc 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_h15.g1 MSMg01no543_h15.g1 CHROMAT_FILE:
MSMg01no543_h15.g1 PHD_FILE: MSMg01no543_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:52 2005
(626 letters)
>mm_chr3_68586339_68587364
Length = 1026
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%)
Strand = Plus / Plus
Query: 1 gtctggggcttcagcccccacatcagatgttttgaacaccagaggtttcctgcgcagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctggggcttcagcccccacatcagatgttttgaacaccagaggtttcctgcgcagtgt 260
Query: 61 atttcctccctaaccagtttggttttttaaacagtaggctgtaatcctctagtgatcttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcctccctaaccagtttggttttttaaacagtaggctgtaatcctctagtgatcttg 320
Query: 121 aaatcctatcagtagggcaaaacagccttttataatattggattaaaatgggcagactta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcctatcagtagggcaaaacagccttttataatattggattaaaatgggcagactta 380
Query: 181 aacacaactggaaataccagaatgtttctgtgcaacaaggagagttatttgaaaaccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacacaactggaaataccagaatgtttctgtgcaacaaggagagttatttgaaaaccatg 440
Query: 241 catctcagctatgattgtatgctgtcccgtgtatactgtctgtttctcccttgggtagcc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catctcagctgtgattgtatgctgtcccgtgtatactgtctgtttctcccttgggtagcc 500
Query: 301 aggcccttttgttggaacaggcggtacagggaggatcttgggtagcagtgaacgtgtgga 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcccttttgttggaacaggtggtacagggaggatcttgggtagcagtgaacgtgtgga 560
Query: 361 taaagaccacatacctgggaggagcttcggagaactagttccatttattggggcggggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagaccacatacctgggaggagcttcggagaactagttccatttattggggcggggaa 620
Query: 421 ggctatttaaacctttgggagtgagtagaggctatgcaagtacatcactggccagggcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggctatttaaacctttgggagtgagtagaggctatgcaagtacatcactggccagggcca 680
Query: 481 gggtgctggagatgcctcatttgcatgaggaggagttccaggtgctgcaggacatgacct 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggtgctggggatgcctcatttgcatgaggaggagttccaggtgctgcaggacatgacct 740
Query: 541 tataaggggtctaccggctaagtgacttcctctggtgggcacagatggggaacacagggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataaggggtctaccggctaagtgacttcctctggtgggcacagatggggaacacagggc 800
Query: 601 tacatgtgccagaacatgcaggccct 626
||||||||||||||||||||||||||
Sbjct: 801 tacatgtgccagaacatgcaggccct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
