Query= MSMg01no543_k18.b1 MSMg01no543_k18.b1 CHROMAT_FILE:
MSMg01no543_k18.b1 PHD_FILE: MSMg01no543_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(543 letters)
>mm_chr3_44254150_44255092
Length = 943
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Plus
Query: 4 ggaattcaggtataggccttgagggaggagaatgtagtgagaaaactcacatatcagaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaggtataggccttgagggaggagaatgtagtgagaaaactcacatatcagaga 263
Query: 64 cttataaaaaagcagggaacaaaccagattactgtgtcaaaatagaaaataaacaacctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttataaaaaagcagggaacaaaccagattactgtgtcaaaatagaaaataaacaacctg 323
Query: 124 aacacagcttgtggctttggtattaagaaaaaacaaacagcctgacaaatactgatgcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacacagcttgtggctttggtattaagaaaaaacaaacagcctgacaaatactgatgcag 383
Query: 184 atgtttgcagccaaccatttgagtgagcacaggaccccagtgaaggaattaggggaagga 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 384 atgtttgcagccaaccatttgagtgagcacaggaccccagtggaggaattaggggaagga 443
Query: 244 ctgaaggaagtgaaggggtttgcaaccccataggaacaataaaatatcaattaaccatat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgaaggaagtgaaggggtttgcaaccccataggaacaataaaatatcaattaaccatat 503
Query: 304 cccccagagctcccagggactaaaccaccaaccaaagagtacacatggaggaacccatgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccccagagctcccagggactaaaccaccaaccaaagagtacacatggaggaacccatgg 563
Query: 364 ctccagctgcatatatagcagaggatggccttatctagcattgttgggaggggaggctct 423
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctccagctgcatatgtagcagaggatggccttatctagcattgttgggaggggaggctct 623
Query: 424 tggttctgtcaaggttcgatgccccagtatagaggaatgctagggcagtaagatgggagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggttctgtcaaggttcgatgccccagtatagaggaatgctagggcagtaagatgggagt 683
Query: 484 gggtgggtaagtgcaggagccccctcatagatgcagaggggagaagggttgggatatggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggtgggtaagtgcaggagccccctcatagatgcagaggggagaagggttgggatatggt 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_k18.g1 MSMg01no543_k18.g1 CHROMAT_FILE:
MSMg01no543_k18.g1 PHD_FILE: MSMg01no543_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:07 2005
(692 letters)
>mm_chr3_44382572_44383661
Length = 1090
Score = 1152 bits (596), Expect = 0.0
Identities = 663/694 (95%), Gaps = 17/694 (2%)
Strand = Plus / Minus
Query: 1 agtccaaaaacaaacaaaggcttcatcagctggactgagaaaaagttttttttttaattt 60
||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 913 agtccaaaaacaaacaaaggctt-----------ctgagaaaaagttttttt----attt 869
Query: 61 ttcttttgtagaattgtttttgattcaggtatttcttattctgaataacaaatcaaaatg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ttcttttgtagaattgcttttgattcaggtatttcttattctgaataacaaatcaaaatg 809
Query: 121 aataacatctactggagtatagtttttaatctaccagaagtcgtttacca-tttattttt 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 808 aataacatctactggagtatagtttttaatctaccagaagtcgtttaccattttattttt 749
Query: 180 agttttcatagaaatatatttaaatttaagtaaaaactgccagattcctactgtaaaagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 748 agttttcatagaaatatatttaaatttaagtaaaaactgccagattcctaccgtaaaagc 689
Query: 240 attttcatagattgttatgtggatgcccaaagtctcttagtccataaattctcactttta 299
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 688 attttcatagattgtcatgtggatgcccagagtctcttagtccataaattctcactttta 629
Query: 300 acaatgcagagtagatatagtcttcttctctgtttcaatgtagatcctaatttggacagt 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 628 acaatgcagagtagatatagtcttcttctctctttcaatgtagatcctaatttggacagt 569
Query: 360 tgtatgaacagggaggtagggtgttaggacagaataccaactcttctataaggctattgt 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 568 tgtatgaacagggaggtagggtgttaggacagaataccaactcttctataaggctactgt 509
Query: 420 attgccacgtcatttggaaaattttgcattagccatctttcctgtcttacataaaaaatg 479
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct: 508 attgccacatcatttggaaaattttgcatcagccatctttcctgtcttacatattaaacg 449
Query: 480 gagataatttagtatctttgaagtgattggaataacatgaattaaaatccaataataatt 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gagataatttagtatctttgaggtgattggaataacatgaattaaaatccaataataatt 389
Query: 540 aatacaaaaaggtgacaaaa-taagcacaagcaatactgttctctatgttttataatata 598
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 388 aatacaaaaaggtgaaaaaaataagcacaaacaatactgttctctatgttttataatata 329
Query: 599 ttcttatgtttctaacatttaaacatcttccttttactaaaagtacataatgtaaaagat 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttcttatgtttctaacatttaaacatcttccttttactaaaagtacataatgtaaaagat 269
Query: 659 ctatgaagcaaacaagggtacaaatatttcatta 692
||||||||||||||||||||||||||||||||||
Sbjct: 268 ctatgaagcaaacaagggtacaaatatttcatta 235
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1090
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1080
Effective search space: 736560
Effective search space used: 736560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
