BAC Information

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BAC

Clone NameMSMg01-543M17
Chromosome3 (Build37)
Map Location 106,975,156 - 107,144,403
singlet/doubletdoublet
Overlap geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15
Upstream geneChi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2
Downstream geneLOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M17.T7 (MSMg01no543_m17.b1)MSMg01-543M17.TJ (MSMg01no543_m17.g1)
ACCAG609246AG609247
length763768
length of high quality
(start - end)		669 (46 - 714)685 (75 - 759)
definitionCHROMAT_FILE: MSMg01no543_m17.b1 PHD_FILE: MSMg01no543_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005CHROMAT_FILE: MSMg01no543_m17.g1 PHD_FILE: MSMg01no543_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,143,811 - 107,144,403)(106,975,156 - 106,975,840)
sequence
TCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCCTTCTACTATCTTCAACTACATGGAAGAATTCCTTCTCTAAACC
TAAAGAGATTTGAAATAAGAGTCAACTCTATCCAGAATCACAATGATGAT
TAAGCCCCTGGGTATTATTTTTTCGTCCTGCTGCTGAGCCTTTGAGATCT
TCCAACACATCTTACAATTCACCCCTAACAATTGATCACATTCTTATTGT
GTACATACCCACACAAAAGCTTTAATGCCAGAGTTACACATTGAAAAACT
TAAGGCTAGAACCTTAAAAACAACAACAACAACAGCAACAACAACAACAA
CAACAACAACAAACAGCATTACTTACTCAGAATTCTATTTGGTGCATTCT
GCATAGACTGAACTGTTAGAATAAATATATGTAAGTTTCCTGGCTACTTA
ATTTGTTATGACATTTTAATTCTCTGATCATTTACAGTGAGCTTGCTTAA
ATTTGTATTATTTCTAATATTTTAGAACAGGCTTAAACTTGTATATTTTA
GAACCAGGTGTATTAAAATATAGTAATATTCCTATATTCTCAGCACTAGG
GAGATGCTGGTAAGGTGATCATAAATCAGTATCCAGCCTAGACTAAAAAG
TAAGAGATTGTCTTTTTCCAAAAAAAAAAAAAAGTTTATTTATTTAATGA
GTATGAGTACACTGTCATATGGTTACAGATGGTTGTGAGCCACCATGTAG
CTGCTGGGAATTG

CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAAGTGAAACCACAGAATTTTAGTG
CTAGAGACCATTAAAAAACTCAACATTTTTTGTTTTATAGATGAAGATCT
ATGTCATTAAAAGAAAATAAAATGGCCTGCTGAACATCCCAGAGCCCAGA
CCCTGGAATTCAAGCCCTCTAAACCCCAGCTCCTTGCTCAGTGACTACAC
CACACTGGGGGCCAGAGTCCCATAAATACCCTAACCCTGCCTCTCTGTTT
AAAAACTTACCCTCAGCTTTCAGGACTCAGACATTAGTGCCAAGGTTGAA
CGTTTCAGGAGGAAGGGAAAAGTAGGGAATACAAAGGAAAGCCATTTCCA
TGTCTCCCCAGTTAGAAGAGCTTTTCTTATTGCCTTCTGGGAGTAGGACC
AGTTGGAAAGTGGTGCAGGTAATGAAGCACAAGTAAGTAGATGGCTCTTG
CCAAGAGCACAGCTTGGAAGAATGGATGGCAGAAGGGAAGCCCCAGATAG
CCAAACCCAGGTCTGAGAATCTGGAGAGACCATACCCCGGCCCCAAACCT
CAACTAGGCCATAGCACTTACTGAAACCCCCAACAGATGCACACACAGCA
GGTTATTGATGGTAAACCCAGGCATGGCTCCTGCCCTCAGAGGGAATGTG
GCCAGCCTGCTTGAGTCATCAGTCACACCACAGTGAGAACAAATTGGTGG
CTCTTCCATAGGGGAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m17.b1 MSMg01no543_m17.b1 CHROMAT_FILE:
MSMg01no543_m17.b1 PHD_FILE: MSMg01no543_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (669 letters)



>mm_chr3_107143335_107144403
          Length = 1069

 Score = 1036 bits (536), Expect = 0.0
 Identities = 586/614 (95%), Gaps = 23/614 (3%)
 Strand = Plus / Minus

                                                                        
Query: 58   aagagatttgaaataagagtcaactctatccagaatcacaatgatgattaagcccctggg 117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1069 aagagatttgaaataagagtcaactctatccagaatcacaatgatgattaagcccctggg 1010

                                                                        
Query: 118  tattattttttcgtcctgctgctgagcctt-tgagatcttccaacacatcttacaattca 176
            |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1009 tattattttttcgtcctgctgctgag-cttctgagatcttccaacacatcttacaattca 951

                                                                        
Query: 177  cccctaacaattgatcacattcttattgtgtacatacccacacaaaagctttaatgccag 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950  cccctaacaattgatcacattcttattgtgtacatacccacacaaaagctttaatgccag 891

                                                                        
Query: 237  agttacacattgaaaaacttaaggctagaaccttaaaaacaacaacaacaacagcaacaa 296
            ||||||||| |||||||||||||||||||||||||||||               ||||||
Sbjct: 890  agttacacagtgaaaaacttaaggctagaaccttaaaaa---------------caacaa 846

                                                                        
Query: 297  caacaacaacaacaacaacaaacagcattacttactcagaattctatttggtgcattctg 356
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  caacaacaacaacaacaaaaaacagcattacttactcagaattctatttggtgcattctg 786

                                                                        
Query: 357  catagactgaactgttagaataaatatatgtaagtttcctggctacttaatttgttatga 416
            ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 785  catagactgaactgttagaataaatatatgtaagtctcctggctacctaatttgttatga 726

                                                                        
Query: 417  cattttaattctctgatcatttacagtgagcttgcttaaatttgtattatttctaatatt 476
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  cgttttaattctctgatcatttacagtgagcttgcttaaatttgtattatttctaatatt 666

                                                                        
Query: 477  ttagaacaggcttaaacttgtatattttagaaccaggtgtattaaaatatagtaatattc 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  ttagaacaggcttaaacttgtatattttagaaccaggtgtattaaaatatagtaatattc 606

                                                                        
Query: 537  ctatattctcagcactagggagatgctggtaaggtgatcataaatcagt-atccagccta 595
            ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 605  ctatattctcagcactagggagatgctggtaaggtgatcataaatcagtga-ccagccta 547

                                                                        
Query: 596  gactaaaaagtaagagattgtctttttccaaaaaaaaaaaaaagtttatttatttaatga 655
            |||||||||||||||||||||||||||||    |||||||||||||||||||||||||||
Sbjct: 546  gactaaaaagtaagagattgtctttttcc----aaaaaaaaaagtttatttatttaatga 491

                          
Query: 656  gtatgagtacactg 669
            ||||||||||||||
Sbjct: 490  gtatgagtacactg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no543_m17.g1 MSMg01no543_m17.g1 CHROMAT_FILE:
MSMg01no543_m17.g1 PHD_FILE: MSMg01no543_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:16 2005
         (685 letters)



>mm_chr3_106974956_106976040
          Length = 1085

 Score = 1324 bits (685), Expect = 0.0
 Identities = 685/685 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtgaaaccacagaattttagtgctagagaccattaaaaaactcaacattttttgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagtgaaaccacagaattttagtgctagagaccattaaaaaactcaacattttttgtt 260

                                                                       
Query: 61  ttatagatgaagatctatgtcattaaaagaaaataaaatggcctgctgaacatcccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatagatgaagatctatgtcattaaaagaaaataaaatggcctgctgaacatcccagag 320

                                                                       
Query: 121 cccagaccctggaattcaagccctctaaaccccagctccttgctcagtgactacaccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccagaccctggaattcaagccctctaaaccccagctccttgctcagtgactacaccaca 380

                                                                       
Query: 181 ctgggggccagagtcccataaataccctaaccctgcctctctgtttaaaaacttaccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgggggccagagtcccataaataccctaaccctgcctctctgtttaaaaacttaccctc 440

                                                                       
Query: 241 agctttcaggactcagacattagtgccaaggttgaacgtttcaggaggaagggaaaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctttcaggactcagacattagtgccaaggttgaacgtttcaggaggaagggaaaagta 500

                                                                       
Query: 301 gggaatacaaaggaaagccatttccatgtctccccagttagaagagcttttcttattgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaatacaaaggaaagccatttccatgtctccccagttagaagagcttttcttattgcc 560

                                                                       
Query: 361 ttctgggagtaggaccagttggaaagtggtgcaggtaatgaagcacaagtaagtagatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgggagtaggaccagttggaaagtggtgcaggtaatgaagcacaagtaagtagatgg 620

                                                                       
Query: 421 ctcttgccaagagcacagcttggaagaatggatggcagaagggaagccccagatagccaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcttgccaagagcacagcttggaagaatggatggcagaagggaagccccagatagccaa 680

                                                                       
Query: 481 acccaggtctgagaatctggagagaccataccccggccccaaacctcaactaggccatag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccaggtctgagaatctggagagaccataccccggccccaaacctcaactaggccatag 740

                                                                       
Query: 541 cacttactgaaacccccaacagatgcacacacagcaggttattgatggtaaacccaggca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacttactgaaacccccaacagatgcacacacagcaggttattgatggtaaacccaggca 800

                                                                       
Query: 601 tggctcctgccctcagagggaatgtggccagcctgcttgagtcatcagtcacaccacagt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggctcctgccctcagagggaatgtggccagcctgcttgagtcatcagtcacaccacagt 860

                                    
Query: 661 gagaacaaattggtggctcttccat 685
           |||||||||||||||||||||||||
Sbjct: 861 gagaacaaattggtggctcttccat 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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