BAC Information

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BAC

Clone NameMSMg01-543O13
Chromosome3 (Build37)
Map Location 65,160,458 - 65,160,694
singlet/doubletsinglet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543O13.T7 (MSMg01no543_o13.b1)MSMg01-543O13.TJ (MSMg01no543_o13.g1)
ACCAG609333AG609334
length785755
length of high quality
(start - end)
234 (124 - 357)561 (74 - 634)
definitionCHROMAT_FILE: MSMg01no543_o13.b1 PHD_FILE: MSMg01no543_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:24 2005CHROMAT_FILE: MSMg01no543_o13.g1 PHD_FILE: MSMg01no543_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACCATTTGTTCTGTCATTAAGGGGGTGGATGTGAGGGCTGGAGC
CAGAAGTTCAGAACAAACACAAGGGCCAAATCTGCAAACAGGAACCATGT
TTTAGTATGTCCTTTGTGTGTGTGTTGGGCTGGGGGGAGGAGGCAGAGAG
AATTTCAAAGCTAATGAGATATGTGTATAGAGTATTCTACCTTTCTTACA
ATTCTGCTTATATCATGCCACTTATAGACCACTTTTGTCTGAGTTTTTAG
TCTGAGGTTTTTTTTTCTTTAAGAACTTAAGCATATTCAAACAACATGTC
CTTGACAACAGTCCATAATTCAAGCTTTAACTAATTTGCCCCAGACTTTA
CTCATTCTAACCTTCCTGAATAACAAGGATTCCCCACATTTGGTACTTCT
CTTGGTGATATTTATGGTCACAACTTTGCGTGTATTTGTTTTATCTCCTT
CCTTCTTATTTAACCCACTGAAATGATGATCCCCAACGAAAATGAATCAC
GTTGAAGCTCCAATGCCCATTAGAATAAATTTAGCTTGCACTTCTCCTCT
GCCCCTATTGAAGCCTACCTCTGTCGCATGGCAAGTTCTACATTGATCCC
GCCCTGTCTGTTGAGCAAAGCTGAATTACCACCCCTTTCCATAATATAAG
AACTGTGGAAGGCTCAGCCTGTCCGGAAGCCTCTTTTTATATAATTACGC
AACTCCCCTACTGATTAACATTCTGGCCTAACCTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAATACTTTTAACATGA
AGGGATGTTGTATTTTGTCAAATGCTTTTCCTGCATCTAAGGAGATGGGC
ATGTGATTTTTTTCTTTGAGTTTGTTTATATAGTAGATTACATTAATGGA
TTTTTGTATATTAAACCAACCTTGCATCCCTGAGATGAAGCCTGCTTGAT
CGTGGTGAATGATGGTTTTAATGTGTTCTTGGATTCGCTTGGCAAGAATT
TTGTTGAGTATTTTTGCATTGATATTCATAAGTGAGATTGGTCTAAAGTT
CTCTTTTGGTTGGGTATTTGTGTGGTTTAGGTGTCAGAGTAATTGTGGCT
TCATAAGATGAATTAGGTAGTGTTCCTTCTATTTCTATTTTATGGAATAA
TTTGAGGAAAATTGGTATCAGGTCTTCTTTGAAGGTCTGGTAAAATTCTA
TACTTAATCCATCTGACCCTGGAGTTTTTTTTGGTTGGAAGATTTTTAAT
GGCGTCTATTTCCTTGTGTGATATGGGCCTGTTTAGATAGTTTACCTGCC
CTTGATTTAACTGGGGTATGTGGTATCTGTCTAGAAAGCCATCTATCTCA
TCTAGATTTTCCAATTTTCTTGAGTATAAACTTTTATAGCAGGATCTGAT
GATTTATTTTAAAAATTCCTCCATTTCTGTTGTCATGTCTCCCTTTTCAT
TCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_o13.b1 MSMg01no543_o13.b1 CHROMAT_FILE:
MSMg01no543_o13.b1 PHD_FILE: MSMg01no543_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:24 2005
         (234 letters)



>mm_chr3_65160258_65160894
          Length = 637

 Score =  391 bits (202), Expect = e-113
 Identities = 228/238 (95%), Gaps = 5/238 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccaaatctgcaaacaggaaccatgttttagtatgtcctttgtgtgtgtgttgggctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 201 ggccaaatctgcaaacaggaaccatgttttagtatgtcctttgtgtgtgtgttggggggg 260

                                                                       
Query: 61  ggggagga---ggcagagagaatttcaaagctaatgagatatgtgtatagagtattctac 117
           |||| |||   |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gggg-ggaaagggcagagagaatttcaaagctaatgagatatgtgtataaagtattctac 319

                                                                       
Query: 118 ctttcttacaattctgcttatatcatgccacttatagaccacttttgtctgagtttttag 177
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 320 ctttcttacaattctgcttataccatgccacttatagaccacttttgtctaagtttttag 379

                                                                     
Query: 178 tctgaggttttttttt-ctttaagaacttaagcatattcaaacaacatgtccttgaca 234
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctgaggttttttttttctttaagaacttaagcatattcaaacaacatgtccttgaca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 637
Length adjustment: 9
Effective length of query: 225
Effective length of database: 628
Effective search space:   141300
Effective search space used:   141300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)