GGACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAAATCCGCG
GAAATCAGTCCATTGATCTCGAAAGACATTAATGACTAGTGATTGTTATT
TCCTGTTATTTGGATGTTGGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTTTCGCTCCNCCTCCCTTCCCCCCCCCCCCCTCCACTTACCTATCCTC
CCCCCTCCCCCGACCCCACCCACCCCAACCCCAAACCAAAAAACCCACAA
ACAAACCAAAAAACCCCCCCAAACCCAAACAAAACACCAACAAACACCCA
CAACCTCACCCACACCAAACCCCCTCCCCCAATCAAAAAACCAATACACA
CCACAAAAACAACACAACAACACACACAACACACAAACAAACAATCAAAA
CAAAAACACAAAACCCCAAAAACCAAAAACCCCCAACAATCAACAACCCA
ACCCCAACAAAAACAACACACAAACACACACAATAAAACCACAAACAAAC
CATACAACACCCCCACAAACCACAACACCCAAACAAAAAAACCAACACAA
AAACACACACACCAAACACACACCACACACACAAACCAACCCACCCAACC
AACCACACAACCCCACTCACCTAAATTTAAACACACAACCCCCTTACAAA
CCCCAACCACAACCCAATACATAAAACACAAACCACTCACACCACCCACA
CAAATAACACTCACTACCCCACACACTTATCAAACAAAAAACAACCACCC
ACCAACCCCCCACAACACACACAACAAACACCCCACACAAACCAACCACA
TAAACCCAAAATTAAAAACACACTACACCACAACAACAAAAATAAACAAC
AACACCACCCTCACAAACCCACCCAAACA

NAGACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGGAGTCCTATAAATGAGT
ATATATTATAAGTCATTACACACATCAAGTATTTCACAGCTCCTATATAC
TGCCTCTGTAAAGTGTAATATATATTGACTTTTAAAAAGAATATTAACAA
ATGCTAGATATGAGACTGGTATGTTAAAAAATGATCATATATATGCATAC
ATATAGTGTATGTATATATGTGTGTATATATTTAAATTGATATATACACT
GTGACATATGAAGGTACAGCTAATCTGTCTATAATTCTAAAACAGAAGTG
CAAAATAATACAATTAATGTAATTATTCAATAAAATTACAGTTGTTTTCA
TATATTTCCAAATCATACGTGCAAAAACATCTGGAATTTCACTTTACCTA
TGATCTGGTTATGAAACACTGAATTATTATGCTTAAAAATACTCTTATCT
GGCGCTAATAGAAGATGATTCTAGTCTTACATCAAGGCTGGTTGATGTAT
GTGGTAGGCCTCTCTTTTTGAGGTAAAGGAGAGGAGGGGTGGATATTGGG
TAAGATGAATANNAGAGGNNNNNNNNTGNNNNGNNGGGNGGNNNTTTTTG
TNTTTGTNNTTTTTTTTTTNTTNTTNTTTTTTTTTTTTTTTTTTTTTGTG
TTTTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTNTT
NNNNGNTGTTTGTTTTTGTTTT

Query= MSMg01no544_c06.g1 MSMg01no544_c06.g1 CHROMAT_FILE:
MSMg01no544_c06.g1 PHD_FILE: MSMg01no544_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:42 2005
         (515 letters)



>mm_chr3_112188393_112189307
          Length = 915

 Score =  909 bits (470), Expect = 0.0
 Identities = 491/498 (98%), Gaps = 1/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  agtatatattataagtcattacacacatcaagtatttcacagctcctatatactgcctct 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agtatatattataagtcattacacacatcaagtatttcacagctcctatatactgcctct 856

                                                                       
Query: 79  gtaaagtgtaatatatattgacttttaaaaagaatattaacaaatgctagatatgagact 138
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 855 gtaaagtgtaatatatattgacttttaaaaagagtattaacaaatgctagatatgagact 796

                                                                       
Query: 139 ggtatgtt-aaaaaatgatcatatatatgcatacatatagtgtatgtatatatgtgtgta 197
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggtatgttaaaaaaatgatcatatatatgcatacatatagtgtatgtatatatgtgtgta 736

                                                                       
Query: 198 tatatttaaattgatatatacactgtgacatatgaaggtacagctaatctgtctataatt 257
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tatatttcaattgatatatacactgtgacatatgaaggtacagctaatctgtctataatt 676

                                                                       
Query: 258 ctaaaacagaagtgcaaaataatacaattaatgtaattattcaataaaattacagttgtt 317
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 675 ctaaaacagaagtgcaaaataatacaattaatgtaaatattcaataaaattacagttgtt 616

                                                                       
Query: 318 ttcatatatttccaaatcatacgtgcaaaaacatctggaatttcactttacctatgatct 377
           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcatatttttccaaatcatatgtgcaaaaacatctggaatttcactttacctatgatct 556

                                                                       
Query: 378 ggttatgaaacactgaattattatgcttaaaaatactcttatctggcgctaatagaagat 437
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 555 ggttatgaaacactgaattattatgcttaaaaatactcttgtctggcgctaatagaagat 496

                                                                       
Query: 438 gattctagtcttacatcaaggctggttgatgtatgtggtaggcctctctttttgaggtaa 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gattctagtcttacatcaaggctggttgatgtatgtggtaggcctctctttttgaggtaa 436

                             
Query: 498 aggagaggaggggtggat 515
           ||||||||||||||||||
Sbjct: 435 aggagaggaggggtggat 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)