BAC Information

Click to search

BAC

Clone NameMSMg01-544F01
Chromosome3 (Build37)
Map Location 96,965,409 - 96,966,046
singlet/doubletsinglet
Overlap geneAcp6
Upstream geneMtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
Downstream geneBcl9, Olfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544F01.T7 (MSMg01no544_f01.b1)MSMg01-544F01.TJ (MSMg01no544_f01.g1)
ACCAG609643AG609644
length750748
length of high quality
(start - end)		645 (50 - 694)686 (17 - 702)
definitionCHROMAT_FILE: MSMg01no544_f01.b1 PHD_FILE: MSMg01no544_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:56 2005CHROMAT_FILE: MSMg01no544_f01.g1 PHD_FILE: MSMg01no544_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAATATCCTGCCAGGGTTTAGAACCCAGTGGAGTGAAGAACT
GGCACATCCTTCATAGATCCACCTCGGCTGAGCTTTGGGCAGGAATTAAG
CAACACAGCAGGCTTCCCAGCTCAACCACACTGTCAAAGGCAGACAGGAA
CTTAACAAGGGACTGGGCTAGGCTCAACTTCATAAGAGTTAAAAGACCTC
CCTACCGGGGGTCACCTTGCCGCTGTCTGGAAGAAGCCCGGGGGAAAGTT
TAAAGCCGAGTTCAAAAGTTTGCTTGAAAGTGAATTGGGAGCTACTCTGA
AGGCCAGAAACATGTTCAACTAAGTTCCATGATTTTATTTCCAAAGCACA
GATCGACTGTTACCCAAACCGATAAGAAAACAATTCAGCCAAACTTGTAT
TGTTTCGAACAATGCCTCTTTGTAAGGACCCGTGAGAAGACTGACCTGAT
GACAGCACGCTTGTCTATAAACCAGTCAGAAATCAGAAATTGTAGCAAAG
GTAACTTTAGTCTTATCATTGTCGCTGTGTAGTCTGTTCTGACAAGAGCA
GAATAAGGAAGGCTAGAAAACTCAATAACCATGGATTTTGAAAAGAAACC
TTGAGAGACAATATCCAGAAACAGGTTCAGATATATATATACATACATAA
TACACACACACACACATATATATACATATATACATATATATACACATATA


NAACAATGCTGTGGGAGGCCTGGCGGCCGCCTCTTCTTCTCGTTCCCTCT
GGCAGAGGAGGAAGGTTGTGCTCCGTACGGCGGGGGGTCCTCTGTGAGAA
AGTCAATGAGCGGTCCGCCGTTATCAGGGAGAACCTGGGGCTTAGGAGGT
TTGGTCTTTATAGAGGGGGTAAGGGCAGGGTAAAGGGCAGATCGGGACGG
AGGTTGCGCAGAAGGACCGGGCGGGAGGACGGGAGCTGTCGGTAAAGGAG
GGGGTTTTGGAGAGACAAACGGTTTGACCCACGGAGGGGGGTCATAGGCA
AGTGCCTCCCAGGTGACAATGTATGGGACCTGATCCGGGTGTCCGTGGGG
ACCGGGAGAGAACACCTTAGATTTAACCTGTAAAATAATGTCCAAATTAA
AAGTACCATCTTGCGGCCACCCCACATCGAAAGTTGGCCACTCGGCAGAG
CAGAAGGTGACCCAACGTCTCTTCTTGACGTCCACGGACTGGTTGGACGC
AATGCGCTGGACGTCTCCCCAGTGTTCTAGGGTCAGACTCAAAGGAGTGG
TTACGGTCTGTCCCATATTTTTAGAAACGGTCCAAAACAATAACGAACCG
ACAAATGACAAAACAACACAGAGACAGACAAGACGCGCGGCGCGGTTTCG
GCGGAAAACCGAAAGCAAAAATTCAGATGGGGGAGAGGAGCGTTTCGGCC
CCTCGCCGCCCACAGAACCACGTATCCCTCGGTCNAAGGAGAGGCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_f01.b1 MSMg01no544_f01.b1 CHROMAT_FILE:
MSMg01no544_f01.b1 PHD_FILE: MSMg01no544_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:56 2005
         (645 letters)



>mm_chr3_96965205_96966249
          Length = 1045

 Score = 1180 bits (610), Expect = 0.0
 Identities = 631/638 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatatcctgccagggtttagaacccagtggagtgaagaactggcacatccttca 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 842 gaattcaatatcctgccagggtttagaacccagtggagtgaggaactggcacatccttca 783

                                                                       
Query: 65  tagatccacctcggctgagctttgggcaggaattaagcaacacagcaggcttcccagctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tagatccacctcggctgagctttgggcaggaattaagcaacacagcaggcttcccagctc 723

                                                                       
Query: 125 aaccacactgtcaaaggcagacaggaacttaacaagggactgggctaggctcaacttcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aaccacactgtcaaaggcagacaggaacttaacaagggactgggctaggctcaacttcat 663

                                                                       
Query: 185 aagagttaaaagacctccctaccgggggtcaccttgccgctgtctggaagaagcccgggg 244
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 662 aagagttgaaagacctccctaccgggggtcaccttgccgctgtctggaagaagcctgggg 603

                                                                       
Query: 245 gaaagtttaaagccgagttcaaaagtttgcttgaaagtgaattgggagctactctgaagg 304
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gaaagtttaaagtcgagttcaaaagtttgcttgaaagtgaattgggagctactctgaagg 543

                                                                       
Query: 305 ccagaaacatgttcaactaagttccatgattttatttccaaagcacagatcgactgttac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 542 ccagaaacatgttcaactaagttccatgattttatttccaaagcacagatcaactgttac 483

                                                                       
Query: 365 ccaaaccgataagaaaacaattcagccaaacttgtattgtttcgaacaatgcctctttgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccaaaccgataagaaaacaattcagccaaacttgtattgtttcgaacaatgcctctttgt 423

                                                                       
Query: 425 aaggacccgtgagaagactgacctgatgacagcacgcttgtctataaaccagtcagaaat 484
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 422 aaggacccgtgagaagactgacctgatgacagcacgcctgtctataaaccagtcagaaat 363

                                                                       
Query: 485 cagaaattgtagcaaaggtaactttagtcttatcattgtcgctgtgtagtctgttctgac 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagaaatcgtagcaaaggtaactttagtcttatcattgtcgctgtgtagtctgttctgac 303

                                                                       
Query: 545 aagagcagaataaggaaggctagaaaactcaataaccatggattttgaaaagaaaccttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aagagcagaataaggaaggctagaaaactcaataaccatggattttgaaaagaaaccttg 243

                                                 
Query: 605 agagacaatatccagaaacaggttcagatatatatata 642
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agagacaatatccagaaacaggttcagatatatatata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |