AATACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCTAGGTTTCCTTTACCTTTAATGAGTATGAAGTGTCC
CTCCTTGTCTTTTTTGATAACTTTATGTTGAACATTGATTTTATTCAATA
TTAGAATGGCTACTTCAGCTTGTTTCTTGGGACCATTTGTTTGGAAAATT
GTTTTCAAGCCTTTTACTCTGAGGTAGTGTCTGTCTTTGTTTCTGTGTGC
AGCAAAATGTTGGGTCCTGTTTATGTAACCCGTCTCTTAATCTATGTCTT
TATATTGAGGAATTGAGTCCATTGATATTCAGAGATCTTAAGGAAAAGTC
ATTGTTGCTTCCTGTTATTTTTGTTGTTAGAGTTGAAATACTGTTCATGT
GGCTATCTTCTTTTAGTTTTGTTGAAAGATTACTTTCTTGCTTTTTCTAT
TTCCTTAGGTTTGTTCTTTTGATTGTGTCCTGAATTTCCTGGATGTTTTG
GATTAGGATCTTTTTGCATTTTCTTTGATCGTTGTGTCAATGTTTTCTAT
GGAATCTTCTGCACTGAGATCCTCTCTCCCATCTCTTGTACTCTTTTGGT
GATGCTTGCATCTATGTCTCCTGATCTCTTTTCCAGTTTATCTATGTCTA
GAGTTGTCTACCTTTGTGATTTCTTTAATGTTTCTATTTCCATTTATAGA
TACTGGATGGCTTAAATTCCTTTATCCGGTTTGGTTTTGATTTCCTGTA

NAAGCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAATATTGGAGAATGTGT
AAATATATTATTAGGGTAGATGGCAGAAGCAGGGCGTGAAAGGGAAAAGA
AGCCTTGACTATGAGAGACTCCTGGACTGAAAGAATTCTGATGCCTGCCT
TGAAATGAGCATTGCTGTTCAAGTCACCCTCTCACCTTAAGATTGTACAT
AAACACATTATCTATACCTTCGTTTATAAAATGGAGGTTTATATTCATTT
TAGGTAAAAAAAAAAACAAAAAAACAATGTATATATAGATTGCGTTTAAC
CTGACCTACAGAAATTTTGTGTGTTGATCACTGAGAGGATTCCCAAGACC
CATTCCCAAGACTCTAATTCCTAAACTAAATAAGATCCCAGGTATTTCCA
GACGATCAGGCAGTCTCTCTGCCCTCTGATATGATCAGATCTCTATCATT
TCTGCCCCACCCCTACATGTTCACAATAAGTCATCATTGCCAAGTTTATT
GCTACTTTACACTGCTGTTGTTTACTCTGTATCCCAGGCTGTCCTGGAAC
TCAGAATTCCTGCCTTAACATCTCACATACAAGGATTGCAGGTGTGTGCT
ACCCTGTCTGTCTATAGCAAATTATTAAAAAAAAAAAGACTTTGGGGGCT
TTTGGAAATTCACATTTTGAGAATCTCATTCCTGAAAAAGAAAATGTCAA
CTCT

Query= MSMg01no544_g17.g1 MSMg01no544_g17.g1 CHROMAT_FILE:
MSMg01no544_g17.g1 PHD_FILE: MSMg01no544_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:04 2005
         (621 letters)



>mm_chr3_78281852_78282874
          Length = 1023

 Score = 1135 bits (587), Expect = 0.0
 Identities = 614/623 (98%), Gaps = 3/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaatattggagaatgtgtaaatatattattagggtagatggcagaagcagggcgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaatattggagaatgtgtaaatatattattagggtagatggcagaagcagggcgtgaa 260

                                                                       
Query: 61  agggaaaagaagccttgactatgagagactcctggactgaaagaattctgatgcctgcct 120
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 261 agggaaaagaagccttgactatgagagactcctggactggaagatttctgatgcctgcct 320

                                                                       
Query: 121 tgaaatgagcattgctgttcaagtcaccctctcaccttaagattgtacataaacacatta 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaatgagcattgctgttcaagttaccctctcaccttaagattgtacataaacacatta 380

                                                                       
Query: 181 tctataccttcgtttataaaatggaggtttatattcattttaggtaaaaa-aaa-aaaca 238
           |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 381 tctacaccttcgtttataaaatggaggtttatattcattttaggtaaaaacaaacaaaca 440

                                                                       
Query: 239 aaaaaacaatgtatatatagattgcgtttaacctgacctacagaaattttgtgtgttgat 298
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaaacaatgtatatatagattgcgtttaacctgacctacagaaattttgtgtgttgat 500

                                                                       
Query: 299 cactgagaggattcccaagacccattcccaagactctaattcctaaactaaataagatcc 358
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgaaaggattcccaagacccattcccaagactctaattcctaaactaaataagatcc 560

                                                                       
Query: 359 caggtatttccagacgatcaggcagtctctctgccctctgatatgatcagatctctatca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggtatttccagacgatcaggcagtctctctgccctctgatatgatcagatctctatca 620

                                                                       
Query: 419 tttctgccccacccctacatgttcacaataagtcatcattgccaagtttattgctacttt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgccccacccctacatgttcacaataagtcatcattgccaagtttattgctacttt 680

                                                                       
Query: 479 acactgctgttgtttactctgtatcccaggctgtcctggaactcagaattcctgccttaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acactgctgttgtttactctgtatcccaggctgtcctggaactcagaattcctgccttaa 740

                                                                       
Query: 539 catctcacatacaaggattgcaggtgtgtgctaccctgtctgtctatagcaaattattaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catctcacatacaaggattgcaggtgtgtgctaccctgtctgtctatagcaaattattaa 800

                                  
Query: 599 aaaaaaaaagactttgggggctt 621
           |||||||| ||||||||||||||
Sbjct: 801 aaaaaaaa-gactttgggggctt 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1023
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1013
Effective search space:   618943
Effective search space used:   618943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)