Query= MSMg01no544_g19.b1 MSMg01no544_g19.b1 CHROMAT_FILE:
MSMg01no544_g19.b1 PHD_FILE: MSMg01no544_g19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:05 2005
(555 letters)
>mm_chr3_85117180_85118133
Length = 954
Score = 1011 bits (523), Expect = 0.0
Identities = 544/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcaaacatctccaaatcctcccaccaatatctccttcctctagaaaccacaac 64
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattcttcaaacagctgtaaatcctcccaccaatatctccttcctctagaaaccacaac 695
Query: 65 agatccccacatcaaagctgcctgtcagctgcccagacaaagaatcaatagtttaacaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 agatccccacatcaaagctgcctgtcagctgcccagacaaagaatcaatagtttaacaga 635
Query: 125 agggaagccgcaggaaagctggatgtttggtacaaaacacctacactgcaaacaatccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agggaagccgcaggaaagctggatgtttggtacaaaacacctacactgcaaacaatccaa 575
Query: 185 ataccatctccttagaactccttagaaacaagaacgaaggtcctggggctgcaccatcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ataccatctccttagaactccttagaaacaagaacgaaggtcctggggctgcaccatcct 515
Query: 245 atgggctctggtcagtttgcctgcaagtgaacagccttgatagctgcactgactgtggga 304
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 514 atgggctctggtcagtttgcctgcaagtgaacagccaggatagctgcactgactgtggga 455
Query: 305 aaaggagagaggtagagaccaggggattccctgtggatgctcagaattagggcaagcaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaaggagagaggtagagaccaggggattccctgtggatgctcagaattagggcaagcaaa 395
Query: 365 agggaaagtgagttgggaatggggtggacaaacaccaggggctctgctattgtcttgctt 424
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 394 agggaaagtgagttgggaatggtgtggacaaacaccaggggctctgctattgtcttgctt 335
Query: 425 ctgtgtgttattgtgtacaattgtgtgctactgtgctgtcacctcagaccaggtggaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctgtgtgttattgtgtacaattgtgtgctactgtgctgtcacctcagaccaggtggaatc 275
Query: 485 ctcaaccatggctcttcacatgtggatataaactcttctgagtttccttccagctctctg 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 274 ctcaaccatggctcttcacatgtggatataaactc-tctgagtttccttccagctctctg 216
Query: 545 atgaatgaact 555
|||||||||||
Sbjct: 215 atgaatgaact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_g19.g1 MSMg01no544_g19.g1 CHROMAT_FILE:
MSMg01no544_g19.g1 PHD_FILE: MSMg01no544_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:05 2005
(575 letters)
>mm_chr3_84956710_84957683
Length = 974
Score = 1071 bits (554), Expect = 0.0
Identities = 569/574 (99%), Gaps = 1/574 (0%)
Strand = Plus / Plus
Query: 1 tctccagtgtaatgcatcacggcagtgccaagtcctactgcccaccaataaacaaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccagtgtaatgcatcacggcagtgccaagtcctactgcccaccaataaacaaccaaa 260
Query: 61 aataaaaaataaaaaaacccaccccaatattatcttcattccagggaccaagagtcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaaaaataaaaaaacccaccccaatattatcttcattccagggaccaagagtcttca 320
Query: 121 gagcttgggatgctaattccatttgaaaaggagaaagagtttcttgcaggaagcacttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcttgggatgctaattccatttgaaaaggagaaagagtttcttgcaggaagcacttgg 380
Query: 181 ggaaccatggattaactaatgaaggtttaaattagaagttctcagtttgggttcatgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaccatggattaactaatgaaggtttaaattagaagttctcagtttgggttcatgtct 440
Query: 241 cagctgttaagttgctggtgttaactggtgaacctacaagaaagagagggtaccgcagat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cagctgttaagttgctggtgttaactggtgaacctacaagaaagagagggtacagcagat 500
Query: 301 tttcaaggctatgcaattatcaactgggtttttgaaggaatatttgcaggaactagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcaaggctatgcaattatcaactgggtttttgaaggaatatttgcaggaactagaaaa 560
Query: 361 aaaatctcagtgtcttctttttaaatacaacccttctagaaggaaatatctatgaattta 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaa-tctcagtgtcttctttttaaatacaacccttctagaaggaaatatctatgaattta 619
Query: 421 ctatggcattggggacttagtcccactcttctcatcacggtggaatggtcctttgcacaa 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 620 ctatggcattggggacttagtcccactcttctcagcacggtggaatggtcctttgcacaa 679
Query: 481 ctcttccatcagcctctgccactctgtcttgtaccaaccgtctgcccaggcctgtatggc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 ctcttccatcagcctctgccactctgtcttgtaccaaccgtctgcccaggcctgtatgac 739
Query: 541 tgtgaaaagagctagagcagacatgtctgatgga 574
|||||||||||||||||||| |||||||||||||
Sbjct: 740 tgtgaaaagagctagagcaggcatgtctgatgga 773
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 974
Length adjustment: 10
Effective length of query: 565
Effective length of database: 964
Effective search space: 544660
Effective search space used: 544660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
