BAC Information

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BAC

Clone NameMSMg01-544I08
Chromosome3 (Build37)
Map Location 132,343,758 - 132,344,364
singlet/doubletsinglet
Overlap geneScye1
Upstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857
Downstream geneA630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544I08.T7 (MSMg01no544_i08.b1)MSMg01-544I08.TJ (MSMg01no544_i08.g1)
ACCAG609800AG609801
length751757
length of high quality
(start - end)
617 (46 - 662)584 (78 - 661)
definitionCHROMAT_FILE: MSMg01no544_i08.b1 PHD_FILE: MSMg01no544_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:12 2005CHROMAT_FILE: MSMg01no544_i08.g1 PHD_FILE: MSMg01no544_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGGATGAGAGTGNGGGGCCGTAGACGACTCACTATATGTCAGAGGATCC
GCGGAATTCTACAGAAATTTGGAAATGCCCCTCTATTCTCTGGATTCCTA
ATTCCACTACTTCAGAATCACAATTATGTAAAAAAAAAAAAAGTACTTTT
CTTAAATATAATACTTCTCAACACTCAGCTTCATCAAATCTATGATGCCA
TCAAGTATAAAACTACTCCATACAACATATTACTATTTTAATTTCACTCA
TACATATAGCATATATAATTGAACTTCCTCTACACACTGTAGATTCATTT
GCTCTAATGCTCTTGATCCATTAGACACATTTTGAATGCTATTCGTGGTT
GTCAATTTGACTATATCTGCAATTAAAAAACCCAAGAGGCTAAGCACGCC
TATAAAGGATCTTTTTTTTTTCTTAATTAAATCATTTGAGGTGGGAAGGC
CCACCTTTAATTTGGGCCATGCCTGTTGGCAGCCCATATAAAGACATAGA
AGATGGCAGCTCACTCTCTTGGCCTGCTTGCGCTAACTCTCACTGGCAAA
TCCATCCCTTCCCTGGCAGTAGAACCTACTCTTTGGAACTTTGGTGCATA
TTTAAGACCATCTGAAACGTCCAGTCTCATGAGCTCAACAACTCTGAGCT
TCCTTCTTGGACATTCCTGTAGTGGACAGCCACAGATGGACTAGCTGGGT
CACAACCTGTAAAACACTTTAATATTTTTCATATATTATGTTCACTGAAA
A
GGACGATGCTAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACATAAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGAT
CCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAACCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCCAAACCTATGATACCCAAGATATAAGATATAATTT
GCTAAACACATGAAACTCAAGAAAAATGATGACTGAAGTGTGGACACTAT
GCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_i08.b1 MSMg01no544_i08.b1 CHROMAT_FILE:
MSMg01no544_i08.b1 PHD_FILE: MSMg01no544_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:12 2005
         (617 letters)



>mm_chr3_132343550_132344566
          Length = 1017

 Score = 1073 bits (555), Expect = 0.0
 Identities = 595/609 (97%), Gaps = 2/609 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   gaattctacagaaatttggaaatgcccctctattctctggattcctaattccactacttc 68
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 209 gaattgtacagaaatttggaaatgcccctctattctctggatccctaattccactacttc 268

                                                                       
Query: 69  agaatcacaattatgtaaaaaaaaaaaaagtacttttcttaaatataatacttctcaaca 128
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 agaatcacaattatgtataaaaaaaaaaagtacttttcttaaatataatacttctcaaca 328

                                                                       
Query: 129 ctcagcttcatcaaatctatgatgccatcaagtataaaactactccatacaacatattac 188
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 329 ctcagcttcatcaaatctatgatgccatcaagtaaaaaactactccatacaacatattac 388

                                                                       
Query: 189 tattttaatttcactcatacatatagcatatataattgaacttcctctacacactgtaga 248
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tattttaatttcattcatacatatagcatatataattgaacttcctctacacactgtaga 448

                                                                       
Query: 249 ttcatttgctctaatgctcttgatccattagacacattttgaatgctattcgtggttgtc 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttcatttgctctaatgctcttgatccattagacacattttgaatgctattcgtggttgtc 508

                                                                       
Query: 309 aatttgactatatctgcaattaaaaaacccaagaggctaagcacgcctataaaggatctt 368
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 509 aatttgactatatctgcaattaaaaaacccaagaggctaagcactcctataaaggatctt 568

                                                                       
Query: 369 ttttttttcttaattaaatcatttgaggtgggaaggcccacctttaatttgggccatgcc 428
           ||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 569 tttttt--cttaattaaatcatttgaggtgggaagacccacctttaatttgggccatgcc 626

                                                                       
Query: 429 tgttggcagcccatataaagacatagaagatggcagctcactctcttggcctgcttgcgc 488
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgttggcagcccatataaacacagagaagatggcagctcactctcttggcctgcttgcgc 686

                                                                       
Query: 489 taactctcactggcaaatccatcccttccctggcagtagaacctactctttggaactttg 548
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 687 taactctcactggcaaatccatcccttgcctggcagtagaacctactctttggaactttg 746

                                                                       
Query: 549 gtgcatatttaagaccatctgaaacgtccagtctcatgagctcaacaactctgagcttcc 608
           |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 747 gtgcatatttaagaccatctgaaacgtctagtctcatgagctcaacaactccgagcttcc 806

                    
Query: 609 ttcttggac 617
           |||||||||
Sbjct: 807 ttcttggac 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)