TTCCATTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGG
ATCCGCGGAATTCCTCCTTGCTAGGATTCCAATCATGTTTTTTTTTTTTT
TTTTTATTTTCTTCAGCCTGACAGCACATTACTGAATAAGAATACCTCCA
AAGGATGGTTCAGTGATCAAATTTCCCTTCTATGTAACATTGATACTTAT
TTTCTGTTTTCTACCCGTGCCCTATTTAAATGGCATTACTAAAACACAAT
TTGTATATGGCTGAAATATTCATTGCTATAGAACAGTATTAAAATAGTAT
TTAAAATATCACATAATCTCTTTAATTAGTTATTATTTCTTCTTGACAAT
TACTCTTTTAACTGAGTAAACAACACTTTTACTACATTGCATTTATTAAT
TAAATATTATATTTAAAATATTAGTCTATCTCAATTACTTCTAGTGTTTT
AATGCTTCCTTGTAGGTATCCATGTGCATATACACACATATACACATATA
AAATATATGATTTACAAATTTTGCCATATTTTACGTTCCATCGTACAAAC
TCAAAATCCATTAGAAGGTCTTAAAGATTTATTTCTGAAATTTTAAAACT
TTTAAAATTAATATTTTAGTTCTATATTTGGGATTTTCTATCTGATTTTA
GGTTAGTTTCTGATCACGATTGTGTAAGTATTCAGTTTCATGGCTTTGCA
TGTGGCTATCCGTATTCTCAGCAGTTTCTTAATGTAATACTG

NAAATGGACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTAC
TCCATTTTTAAAAATATTTTTATTAGGTATTTTCCTCATTTACATTTCCA
ATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCTACTCCCCTACCCAC
TCACTCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAG
TTTGCTAGTCCAATGTACCCCATTTTTTAATAGGATTATTTGGTTCTCTG
GCGTCTAACTTCTTGAGTTCTTCGTATATATTGGATATTAGCTATCTATT
GGATGTAGGATTGGTAAAGATCTTTTCTGAATCTGTTTGTTGCCTTTTTG
TCTTATTGATGGCGTCCTTTGCCTTACAGAAGCTTTGCAATTTATGAGGT
CTTATTCGTTGATTCTTGATCTTATAGCACAAGCCATTGCAGATATGTTC
AGAAATTTCCCCCTGTGTCCATATCTTTGTGGCTCTTTACCACTTTCCCC
TCTATAAGTTTCAGTGTCTCTAAGTTTCTGGTTTTGTGTGGAGGTTCTTG
ATCCATTTGGACTTGAGCTTTGTACAAGGAAATAAGAATGGATTGATTGA
TTTACATTCTTCTACATGTTGACTGCCAGTTGTGCCAGCACTATTTGTTG
AAAATGCTATCTTTTACACTGGATGGTTTTAGCTCCT

Query= MSMg01no544_l14.b1 MSMg01no544_l14.b1 CHROMAT_FILE:
MSMg01no544_l14.b1 PHD_FILE: MSMg01no544_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:29 2005
         (617 letters)



>mm_chr3_111711853_111712869
          Length = 1017

 Score = 1027 bits (531), Expect = 0.0
 Identities = 575/597 (96%), Gaps = 13/597 (2%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattcctccttgctaggattccaatcatgttttttttttttttttttattttcttcagc 68
           ||||||||||||||||||||||||||||            |||||||| || ||||||||
Sbjct: 584 gaattcctccttgctaggattccaatca------------tttttttt-ttctcttcagc 538

                                                                       
Query: 69  ctgacagcacattactgaataagaatacctccaaaggatggttcagtgatcaaatttccc 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ctgacagcacattactgaataagaatacctccaaaggatggttcagtgatcaaatttccc 478

                                                                       
Query: 129 ttctatgtaacattgatacttattttctgttttctacccgtgccctatttaaatggcatt 188
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 477 ttctatgtaacattgatacttattttctgttttctacctgtgccctatttaaatggcatt 418

                                                                       
Query: 189 actaaaacacaatttgtatatggctgaaatattcattgctatagaacagtattaaaatag 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 actaaaacacaatttgtatatggctgaaatattcattgctatagaacagtattaaaatag 358

                                                                       
Query: 249 tatttaaaatatcacataatctctttaattagttattatttcttcttgacaattactctt 308
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tatctaaaatatcacataatctctttaattagttattatttcttcttgacaattactctt 298

                                                                       
Query: 309 ttaactgagtaaacaacacttttactacattgcatttattaattaaatattatatttaaa 368
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttaattgagtaaacaacacttttactacattgcatttattaattaaatattatatttaaa 238

                                                                       
Query: 369 atattagtctatctcaattacttctagtgttttaatgcttccttgtaggtatccatgtgc 428
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 237 atattagtctatctcaatttcttctagtgttttaatgcttccttttaggtatccatgtgc 178

                                                                       
Query: 429 atatacacacatatacacatataaaatatatgatttacaaattttgccatattttacgtt 488
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 177 atatacacacatacacacatataaaatatatgatttacaaatttttccatattttacgtt 118

                                                                       
Query: 489 ccatcgtacaaactcaaaatccattagaaggtcttaaagatttatttctgaaattttaaa 548
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ccatcatacaaactcaaaatccattagaaggtcttaaagatttatttctgaaattttaaa 58

                                                                    
Query: 549 acttttaaaattaatattttagttctatatttgggattttctatctgattttaggtt 605
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  acttttaaaattaatattttagttctatatttgggattttctatctgattttaggtt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)