NGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTACGTTTATGACATCAAAACATTGAATGCTATATGGTACAG
TCCTTCAGCTGCCATGATTTGCATGAGCTTTCTTAGAACAGTCATGGCTT
TCCACTCAGATATTCTGTGCCATGCATATGATGTATTAGAGACATTCTGT
AGATAAACTGCACATGTTTTAGGGTCCTGCCCATCCCTTAAAATTACATT
GCCACAGAGAGCCCTTCATTCTCTTGCTGTGCTCCATAAGATATGTGAGG
CTGGGGTCTCTTGGGGTTGTTAGCTGGCAACTATGGTATTGATCCTGGCT
TATTTCCTGATAGTAGATAAAAGATCTTTCAACTGTGAGTAGTATGGTTT
GGTTTTGAAGTGTCCCCTCAAAAGGCTTATTTGTTGAAAACTTGATCCTC
ATCTGATGACTTCCTTGTTGAGTGGAGATTGGATCACAAAGGCTGCCATT
CACTCAGTGGACTATTTCATTGATGAATGAGCTGTTAGGAAGTGGGTGCT
AGCTGGAGAGGTATGTCACATCCTTGGGGTAGTACATCTCATCTCTGGAC
CCTTCTTTCCGTCTCTGTTTCCTGGCCCCTGGGAGGTGAGCAGCTGCTCT
CTGTTATGATGCACTCTGCTTTTACACTGGCCACAGGGACATGGAATGAA
GCATCTAATTATGCTTGGGTTTAATGTCTACTTGCCACAAATTTCGATC

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACTCTAAGCTCAGTGATCAGTCT
GAGTGGTTGCCCAGAAATTATACAGGGCTCAGAATATCAGGAGTTGGGCT
GGTGAGATGGGCTGGTGAGCTGGGCTGATGAGATGGGTCAGTAGGTAAAG
GACCCTCCCACCAAGCCTGATGACCTAAGCTAAATCCCCAAGACCCATAA
GGTTGAAGGAGTGAACCAACTCCCACAAGTTGTCCTTTCTACAACTTACA
TATGCATGTCCATGCCCATAGGAAATGTAATTTTTTTTTAATTTCCAAAG
AAGAATATTTGGGAGTTACTTTCTGACTGTTTTGATTTGTGTTGTGTTTT
GTTTTTGAGACAACGTCTCACTTTGTAGATGACCTGGGACTCATGAAGTA
GACCAATCTGGTCTCAAACTCATGGAGATATGCCTGCCTTTGCCTCCTGC
ACCAGCACACCTAGCAAGAATAGTTGTACTTTAAGAAAATGAGGAGGAGG
AGGAGGAAGAGAAGAAGAAGGAGGAGGAGGACGAGGAGGAGGAGGAGGAT
TNNNNTTTNNTNTNTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTGTNTTN
TTTTTTTTGTTTTTTNNTGTTTTTTTTTTTGTTTTTTTTTTTGGTGTTTT
TGTGTGGGTGGTTGTTGTGGTTTTTTTTTTTTGTTTTTGTTTTTT

Query= MSMg01no544_n12.b1 MSMg01no544_n12.b1 CHROMAT_FILE:
MSMg01no544_n12.b1 PHD_FILE: MSMg01no544_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:39 2005
         (636 letters)



>mm_chr3_50864552_50865587
          Length = 1036

 Score = 1178 bits (609), Expect = 0.0
 Identities = 627/633 (99%), Gaps = 2/633 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttacgtttatgacatcaaaacattgaatgctatatggtacagtccttcagctgc 64
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 836 gaattcttacgttaatgacatcaaaatattgaatgctatatggtacagtccttcagctgc 777

                                                                       
Query: 65  catgatttgcatgagctttcttagaacagtcatggctttccactcagatattctgtgcca 124
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 cctgatttgcatgagctttcttagaacagtcatggctttccactcagatattctgtgcca 717

                                                                       
Query: 125 tgcatatgatgtattagagacattctgtagataaactgcacatgttttagggtcctgccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgcatatgatgtattagagacattctgtagataaactgcacatgttttagggtcctgccc 657

                                                                       
Query: 185 atcccttaaaattacattgccacagagagcccttcattctcttgctgtgctccataagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atcccttaaaattacattgccacagagagcccttcattctcttgctgtgctccataagat 597

                                                                       
Query: 245 atgtgaggctggggtctcttggggttgttagctggcaactatggtattgatcctggctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 atgtgaggctggggtctcttggggttgttagctggcaactatggtattgatcctggctta 537

                                                                       
Query: 305 tttcctgatagtagataaaagatctttcaactgtgagtagtatggtttggttttgaagtg 364
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 536 tttcctgatagtagataaaagatctttcaactgtgagtggtatggtttggttttgaagtg 477

                                                                       
Query: 365 tcccctcaaaaggcttatttgttgaaaacttgatcctcatctgatgacttccttgttgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tcccctcaaaaggcttatttgttgaaaacttgatcctcatctgatgacttccttgttgag 417

                                                                       
Query: 425 tggagattggatcacaaaggctgccattcactcagtggactatttcattgatgaatgagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggagattggatcacaaaggctgccattcactcagtggactatttcattgatgaatgagc 357

                                                                       
Query: 485 tgttaggaagtgggtgctagctggagaggtatgtcacatccttggggtagtacatctcat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tgttaggaagtgggtgctagctggagaggtatgtcacatccttggggtagtacatctcat 297

                                                                       
Query: 545 ctctggacccttctttccgtctctgtttcctggcccctgggaggtgagcagctgctctct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctctggacccttctttccgtctctgtttcctggcccctgggaggtgagcagctgctctct 237

                                            
Query: 605 gttatgatgcactctgcttttac-actggccac 636
           |||||||||||||||||||| || |||||||||
Sbjct: 236 gttatgatgcactctgcttt-accactggccac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)