BAC Information

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BAC

Clone NameMSMg01-545A07
Chromosome3 (Build37)
Map Location 87,432,183 - 87,555,933
singlet/doubletdoublet
Overlap geneArhgef11, EG625281, 3110045G13Rik
Upstream geneLrba, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneNtrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545A07.T7 (MSMg01no545_a07.b1)MSMg01-545A07.TJ (MSMg01no545_a07.g1)
ACCAG610180AG610181
length724722
length of high quality
(start - end)		686 (39 - 724)581 (49 - 629)
definitionCHROMAT_FILE: MSMg01no545_a07.b1 PHD_FILE: MSMg01no545_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:53 2005CHROMAT_FILE: MSMg01no545_a07.g1 PHD_FILE: MSMg01no545_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,432,183 - 87,432,864)(87,555,363 - 87,555,933)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TCATGTTGCCCCTCAGATAGGGTGATGTAACAAATCTTCACATGGCATGC
AAATGCACGGATTCCATATGAATAAGATGCCTACTGTGGTGTCAAAGAAC
TGATGATTTTGTTGAGAGGAGACAGTTGTGAGATAGTACTGAAACTTACT
CCTCTGATCGCCATTTGGAATATGTGGCAAGGACACCTTTAGGGTTACAG
ACGTCCTGGAGGAAGAGACCTTCAGATTGAGACACAAAATGATAGCCAGG
AAGGAGAAAGGAAAAGAAAACCCAGGCAAAAAACATCTTCCCCTGGAAGA
GCTCTTCATTAATTTAGTAGGATTAAATCAAAGAGTAAACTTGTCCCCAA
ACTGATCTAAAGTTCTGGATCTTGAATAAGAAGGATCCGTGGAATGTCGT
TGATTTCTCTTAAAATGTTGGTACGAGTTCTCAGAATGTTAAGATCCCAC
ATGAACATGCTGCCTGGAGTAGCCCACAACACAACCAGTCCTCTCCACTC
AAGGCTTGAGTTTCTGTTCTACGTCCTTGGTCACTTCTCTTGAAGTGGGG
CCCACAGACCACACAAGGTTGCCAGAGGGCCCGACCTTTAGTCTCAAATC
TTGTCATGGGAAAACTCCATTACAGTGGGTTCTAGCCGTGGCTGAGTCTG
AGGTGTGGATCTAGATATGGGTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGT
GGATTGTCTCAAGGAGGGGCAAACTGCTGTTGCCCTGGCCTCCTCCTGTC
TACCTGGCACCCGTGTTTGTCCTGCAGATGTCTCTCCGAGCTATAGTCAC
TACTACTCCAACCCCAGCTACCACACACTGTCTCAGTGTTCTCCTAACCC
CCCACCCCCTAACAAGGTCAGTGCACTGAGGGGGTGTGCTCTGTGGATGA
GATGGCTCTCTCAGGAAAGCCTCACCCGTGCTTGTGCTCCCCACAGGTCC
CAGGCAGTCAGCTCTTTGTCAGCTCCCAGGCCCCTGAGCGGCCAAGCAGA
GCCCACGGGCGTGAGAACCATGTCACACTGCCCGCTGACTGGAAGCACCG
CCGGGAGCCCCATGAAAGAGGTAGGTGCTTGGAGGGCCGAGGCAGAGCGG
TGTCACCTGCTGGATCGGCTTGGTGGGGTCAGGGTGGGGGAAGAGCCTGC
TTCCAGAGGAGGCTTGGGAAGGCCACAGGTCTGATTTCTACTCACCTTCC
CCCAGGCGCCAGCCACCTGGACCGAAGCTATAGCTGTAGCTATAGCCACA
GGAATGGCCCGGGACCATTCTGTCATAAAGGTATGAGTGCAGAGACGTGG
AGGGGAAGGAAGCCAGGGTCTCCAGGCCTCTAAGGAGCCTGATTTTCTTC
CTTGATCTCTTAAGTCCCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_a07.b1 MSMg01no545_a07.b1 CHROMAT_FILE:
MSMg01no545_a07.b1 PHD_FILE: MSMg01no545_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:53 2005
         (686 letters)



>mm_chr3_87431979_87433064
          Length = 1086

 Score = 1319 bits (682), Expect = 0.0
 Identities = 682/682 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcatgttgcccctcagatagggtgatgtaacaaatcttcacatggcatgcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcatgttgcccctcagatagggtgatgtaacaaatcttcacatggcatgcaa 264

                                                                       
Query: 65  atgcacggattccatatgaataagatgcctactgtggtgtcaaagaactgatgattttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcacggattccatatgaataagatgcctactgtggtgtcaaagaactgatgattttgt 324

                                                                       
Query: 125 tgagaggagacagttgtgagatagtactgaaacttactcctctgatcgccatttggaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgagaggagacagttgtgagatagtactgaaacttactcctctgatcgccatttggaata 384

                                                                       
Query: 185 tgtggcaaggacacctttagggttacagacgtcctggaggaagagaccttcagattgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtggcaaggacacctttagggttacagacgtcctggaggaagagaccttcagattgaga 444

                                                                       
Query: 245 cacaaaatgatagccaggaaggagaaaggaaaagaaaacccaggcaaaaaacatcttccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacaaaatgatagccaggaaggagaaaggaaaagaaaacccaggcaaaaaacatcttccc 504

                                                                       
Query: 305 ctggaagagctcttcattaatttagtaggattaaatcaaagagtaaacttgtccccaaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggaagagctcttcattaatttagtaggattaaatcaaagagtaaacttgtccccaaac 564

                                                                       
Query: 365 tgatctaaagttctggatcttgaataagaaggatccgtggaatgtcgttgatttctctta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatctaaagttctggatcttgaataagaaggatccgtggaatgtcgttgatttctctta 624

                                                                       
Query: 425 aaatgttggtacgagttctcagaatgttaagatcccacatgaacatgctgcctggagtag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatgttggtacgagttctcagaatgttaagatcccacatgaacatgctgcctggagtag 684

                                                                       
Query: 485 cccacaacacaaccagtcctctccactcaaggcttgagtttctgttctacgtccttggtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccacaacacaaccagtcctctccactcaaggcttgagtttctgttctacgtccttggtc 744

                                                                       
Query: 545 acttctcttgaagtggggcccacagaccacacaaggttgccagagggcccgacctttagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acttctcttgaagtggggcccacagaccacacaaggttgccagagggcccgacctttagt 804

                                                                       
Query: 605 ctcaaatcttgtcatgggaaaactccattacagtgggttctagccgtggctgagtctgag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctcaaatcttgtcatgggaaaactccattacagtgggttctagccgtggctgagtctgag 864

                                 
Query: 665 gtgtggatctagatatgggtat 686
           ||||||||||||||||||||||
Sbjct: 865 gtgtggatctagatatgggtat 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1086
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1076
Effective search space:   727376
Effective search space used:   727376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_a07.g1 MSMg01no545_a07.g1 CHROMAT_FILE:
MSMg01no545_a07.g1 PHD_FILE: MSMg01no545_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:53 2005
         (581 letters)



>mm_chr3_87555153_87556133
          Length = 981

 Score = 1104 bits (571), Expect = 0.0
 Identities = 571/571 (100%)
 Strand = Plus / Minus

                                                                       
Query: 11  tcaaggaggggcaaactgctgttgccctggcctcctcctgtctacctggcacccgtgttt 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tcaaggaggggcaaactgctgttgccctggcctcctcctgtctacctggcacccgtgttt 722

                                                                       
Query: 71  gtcctgcagatgtctctccgagctatagtcactactactccaaccccagctaccacacac 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gtcctgcagatgtctctccgagctatagtcactactactccaaccccagctaccacacac 662

                                                                       
Query: 131 tgtctcagtgttctcctaaccccccaccccctaacaaggtcagtgcactgagggggtgtg 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgtctcagtgttctcctaaccccccaccccctaacaaggtcagtgcactgagggggtgtg 602

                                                                       
Query: 191 ctctgtggatgagatggctctctcaggaaagcctcacccgtgcttgtgctccccacaggt 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctctgtggatgagatggctctctcaggaaagcctcacccgtgcttgtgctccccacaggt 542

                                                                       
Query: 251 cccaggcagtcagctctttgtcagctcccaggcccctgagcggccaagcagagcccacgg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cccaggcagtcagctctttgtcagctcccaggcccctgagcggccaagcagagcccacgg 482

                                                                       
Query: 311 gcgtgagaaccatgtcacactgcccgctgactggaagcaccgccgggagccccatgaaag 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcgtgagaaccatgtcacactgcccgctgactggaagcaccgccgggagccccatgaaag 422

                                                                       
Query: 371 aggtaggtgcttggagggccgaggcagagcggtgtcacctgctggatcggcttggtgggg 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aggtaggtgcttggagggccgaggcagagcggtgtcacctgctggatcggcttggtgggg 362

                                                                       
Query: 431 tcagggtgggggaagagcctgcttccagaggaggcttgggaaggccacaggtctgatttc 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcagggtgggggaagagcctgcttccagaggaggcttgggaaggccacaggtctgatttc 302

                                                                       
Query: 491 tactcaccttcccccaggcgccagccacctggaccgaagctatagctgtagctatagcca 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tactcaccttcccccaggcgccagccacctggaccgaagctatagctgtagctatagcca 242

                                          
Query: 551 caggaatggcccgggaccattctgtcataaa 581
           |||||||||||||||||||||||||||||||
Sbjct: 241 caggaatggcccgggaccattctgtcataaa 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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