BAC Information

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BAC

Clone NameMSMg01-545B09
Chromosome3 (Build37)
Map Location 91,144,525 - 91,145,018
singlet/doubletsinglet
Overlap genenone
Upstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545B09.T7 (MSMg01no545_b09.b1)MSMg01-545B09.TJ (MSMg01no545_b09.g1)
ACCAG610232AG610233
length740728
length of high quality
(start - end)
669 (41 - 709)611 (70 - 680)
definitionCHROMAT_FILE: MSMg01no545_b09.b1 PHD_FILE: MSMg01no545_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:58 2005CHROMAT_FILE: MSMg01no545_b09.g1 PHD_FILE: MSMg01no545_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCATTATGATGTTTTGGAATTGAATGTATACCCAATCACGTTGAAGTTA
TGTTATCTTGTGATCTGCTTTTTGATTTTATAAGAAATTATAGTTAAGTA
TTTAGAAGAATCTCAGAAGAGACTTTCAGTTTTGGACTTTTAAATATTGC
TAAGATTGTGATATACTATGGGGACATTTGAAATTCGACCAAGTATATTT
TGCATCATGCTATGACCAACTATGATTCCCATAGACTCCTTTCTTTGAAG
AAACCTGTGGAGATTAAGCACTGGAATGAGGTGGTTTGAATATGGTTCGT
CCACTGAGTGGCACTATTAAGACATATAGCATTGTTGTAGTAGGTGTGGT
CTTGTTGGACAAAGTGAGTCACTGTAAGAGTTGGCTTTAAGACACAAACA
TCATGACCAAGAAGCAAGTTGGGGAAGAAAGGGTTTATTCACCTTACATT
TCCACACTGCTGTTTTCACCAAAGAAAGTCAGGACAGGAAATCAAGCACA
TCTGGAAGCAGAAACTGATGAAGAGGCCATGGGGGGGGTCCTTACTGGCT
TGCTTCCCCTGGTTTGCTCAGCCTTCTCTCTTATATAACCAAGATTACCA
TCCCAAATATGGCATCACCTACAAGGGGACCTCCCACCTTGATCACTAAT
TGAAAAAATGCCTTACAACTAACTGTATTTCATGGAGGCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTACTGACTATGGACTTTGAGGTTTCAGA
AGGCTAAATCAGTAACACTGGCTCTCTCTTCATGCTGCCTGTGGATCTGT
GTTGTGGGAAACCTCTGGCTGTATTTTCAGGTTCTCCATGGAAGATAGCA
GATGGGGAAGGACATCAACAGGGGCAAGAATTAGTCTTGGGAGATACTTA
TTTTTTTTCTTTTTCTTCAGGAAAATATTTTCCTGTTTTTTTTTATTCTT
TCATTTATTTATATTCCAAATGTTGGAATATAAATATAAATTCCCCTTTC
CTGGTCCCACCTCCAAGAGTTCTATACACCATCCACCCTTGCCTTTGTAT
CTGAGAGGGTGCTCCCCACACCACCACCTCAGCTCAATCACCCCTTCAAC
CAATCCCCTGGCATCACTCACCCCCACATCCTCCCTCACTTGGACATCTA
AACTGGACAGGATTAGGCACATCCTCTCCAACTGAGGTGAGATTAGGCTG
TTCTCTGCTACATCTGTACTGGTGGCCATGTAGCAGCCCATGTATTCTTT
TTGGTTGGTGGCTTAGTCTCTTGGAGCTCCCAATGGTCTGGGTTGTTTGA
CATTATCGGTCTGGATTGGTTGATATTGTAGCATGCCATCCCTTAAGCTC
CTTAAGTCCTTCCATGTTTTCCTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_b09.g1 MSMg01no545_b09.g1 CHROMAT_FILE:
MSMg01no545_b09.g1 PHD_FILE: MSMg01no545_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:58 2005
         (611 letters)



>mm_chr3_91144525_91145535
          Length = 1011

 Score =  932 bits (482), Expect = 0.0
 Identities = 493/498 (98%), Gaps = 4/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttactgactatggactttgaggtttcagaaggctaaatcagtaacactggctctctct 60
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgttactgactatggac--tgaggtttcagaaggctaaatcagtaacactggctctctct 437

                                                                       
Query: 61  tcatgctgcctgtggatctgtgttgtgggaaacctctggctgtattttcaggttctccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tcatgctgcctgtggatctgtgttgtgggaaacctctggctgtattttcaggttctccat 377

                                                                       
Query: 121 ggaagatagcagatggggaaggacatcaacaggggcaagaattagtcttgggagatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggaagatagcagatggggaaggacatcaacaggggcaagaattagtcttgggagatactt 317

                                                                       
Query: 181 attttttttctttttcttcaggaaaatattttcctgtttttttttattctttcatttatt 240
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 316 attttttttctttttcttcaggaaaatattttcctg--tttttttattctttcatttatt 259

                                                                       
Query: 241 tatattccaaatgttggaatataaatataaattcccctttcctggtcccacctccaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatattccaaatgttggaatataaatataaattcccctttcctggtcccacctccaagag 199

                                                                       
Query: 301 ttctatacaccatccacccttgcctttgtatctgagagggtgctccccacaccaccacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttctatacaccatccacccttgcctttgtatctgagagggtgctccccacaccaccacct 139

                                                                       
Query: 361 cagctcaatcaccccttcaaccaatcccctggcatcactcacccccacatcctccctcac 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 138 cagctcaatcaccccttcaaccaatcccctggcctcactcacccccacatcctccctcac 79

                                                                       
Query: 421 ttggacatctaaactggacaggattaggcacatcctctccaactgaggtgagattaggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  ttggacatctaaactggacaggattaggcacatcctctccaactgaggtgagattaggct 19

                             
Query: 481 gttctctgctacatctgt 498
           ||||||||||||||||||
Sbjct: 18  gttctctgctacatctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)