BAC Information

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BAC

Clone NameMSMg01-545D18
Chromosome3 (Build37)
Map Location 48,092,445 - 48,093,146
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545D18.T7 (MSMg01no545_d18.b1)MSMg01-545D18.TJ (MSMg01no545_d18.g1)
ACCAG610345AG610346
length740744
length of high quality
(start - end)
711 (30 - 740)680 (65 - 744)
definitionCHROMAT_FILE: MSMg01no545_d18.b1 PHD_FILE: MSMg01no545_d18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:09 2005CHROMAT_FILE: MSMg01no545_d18.g1 PHD_FILE: MSMg01no545_d18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGCCGCTAATCGACTCACTATTTTCAGAGGATCCGCGGAATTCTCATC
AAATAGCCACTGGGTGTTGTACAGGAAGATTTTGCACTACCATGTCAGTA
ATAAAGAAAACAAGCATATGCCTGACAACCAGCTGTCTGGAAATGGCCAT
AGTGTCAGTGCCTTCTCTAGCTTTGGTATGGTGCATCTCTGGAGCCTTGT
GCAAAGTCTCTGCAGAGATTTGCACTGGGGCCTTCTAGCTGGGACCTGCT
GTGGCAGACATGGGGATCCTGGACACTGTCACAGTTCATAAGCATGTTCT
TCATCTTACGTGACCCTTTTAAAAATCCAACTGCAGCTTTGTGAATTGAG
CCAGCAGCTCTGCTGGGCTGTGAACAGCAGACAAGGCTTCACCTTGCTTC
TGATGCCAAGAAGTGAAGCTATCCATCCTGCCTGTGGAAAGCATGGATGC
CCTTGCACTTCTGAAACCAACTAGGGGAGGTGCGCTGGAGAGCTAAGGCT
TATTAGTCCTCTCCTCGCCCTTGGAAGGTCAAGAAAAAAATGGCTTACCT
GAACAGTCACAAAAGCATGCCCCAACAGAGAATCTCTTTGAGAGAGCAGG
TCAGTAGCTCTGTTAGGGTTAAGGGTTGGTATGTGCCCGGTGGCCCAAGC
ACTAGTTTGGATAGCCAGGCACATACCATCTCAAGGTCTAGATAATGGAA
CAGCTTCTGTGGAAAGGTCTAAATCTGTCTTTGAAACACT
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGGGAGAATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTAGTAAGGACACATGCTCC
ACTATGTTAATAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACA
CAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTA
GCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTC
ACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCA
TAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGANAC
TCAAGAAAAATGAATACTGAAGTGTGGACACTATGCCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_d18.b1 MSMg01no545_d18.b1 CHROMAT_FILE:
MSMg01no545_d18.b1 PHD_FILE: MSMg01no545_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:09 2005
         (711 letters)



>mm_chr3_48092236_48093346
          Length = 1111

 Score = 1357 bits (702), Expect = 0.0
 Identities = 702/702 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattctcatcaaatagccactgggtgttgtacaggaagattttgcactaccatgtcag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctcatcaaatagccactgggtgttgtacaggaagattttgcactaccatgtcag 269

                                                                       
Query: 70  taataaagaaaacaagcatatgcctgacaaccagctgtctggaaatggccatagtgtcag 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taataaagaaaacaagcatatgcctgacaaccagctgtctggaaatggccatagtgtcag 329

                                                                       
Query: 130 tgccttctctagctttggtatggtgcatctctggagccttgtgcaaagtctctgcagaga 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgccttctctagctttggtatggtgcatctctggagccttgtgcaaagtctctgcagaga 389

                                                                       
Query: 190 tttgcactggggccttctagctgggacctgctgtggcagacatggggatcctggacactg 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttgcactggggccttctagctgggacctgctgtggcagacatggggatcctggacactg 449

                                                                       
Query: 250 tcacagttcataagcatgttcttcatcttacgtgacccttttaaaaatccaactgcagct 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcacagttcataagcatgttcttcatcttacgtgacccttttaaaaatccaactgcagct 509

                                                                       
Query: 310 ttgtgaattgagccagcagctctgctgggctgtgaacagcagacaaggcttcaccttgct 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ttgtgaattgagccagcagctctgctgggctgtgaacagcagacaaggcttcaccttgct 569

                                                                       
Query: 370 tctgatgccaagaagtgaagctatccatcctgcctgtggaaagcatggatgcccttgcac 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctgatgccaagaagtgaagctatccatcctgcctgtggaaagcatggatgcccttgcac 629

                                                                       
Query: 430 ttctgaaaccaactaggggaggtgcgctggagagctaaggcttattagtcctctcctcgc 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttctgaaaccaactaggggaggtgcgctggagagctaaggcttattagtcctctcctcgc 689

                                                                       
Query: 490 ccttggaaggtcaagaaaaaaatggcttacctgaacagtcacaaaagcatgccccaacag 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ccttggaaggtcaagaaaaaaatggcttacctgaacagtcacaaaagcatgccccaacag 749

                                                                       
Query: 550 agaatctctttgagagagcaggtcagtagctctgttagggttaagggttggtatgtgccc 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 agaatctctttgagagagcaggtcagtagctctgttagggttaagggttggtatgtgccc 809

                                                                       
Query: 610 ggtggcccaagcactagtttggatagccaggcacataccatctcaaggtctagataatgg 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 ggtggcccaagcactagtttggatagccaggcacataccatctcaaggtctagataatgg 869

                                                     
Query: 670 aacagcttctgtggaaaggtctaaatctgtctttgaaacact 711
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 aacagcttctgtggaaaggtctaaatctgtctttgaaacact 911


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)