Query= MSMg01no545_e07.b1 MSMg01no545_e07.b1 CHROMAT_FILE:
MSMg01no545_e07.b1 PHD_FILE: MSMg01no545_e07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:11 2005
(678 letters)
>mm_chr3_129239316_129240393
Length = 1078
Score = 1094 bits (566), Expect = 0.0
Identities = 579/586 (98%), Gaps = 5/586 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaataggaacacagtattgtcttgacagccaatcccatcccgggtaactttaat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggaattcaataggaacacagtattgtcttgacagccaatcccatcccgggtaactttaat 522
Query: 64 aaccacctggtaaaaccctagcctatcctgtaccacaccacagagtccacggattcccag 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 521 aaccacctggtaaaaccctagcctatcctgtaccacaccacagagtccatggattcccag 462
Query: 124 cacattcctcaggtgcacacagccaagctacatggaaaatttctgcagcaactcagagct 183
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 461 cacattcctcaggtgcacacagccaagctacatggaaaaattctgcagcaactcagagct 402
Query: 184 gttgtccccacaggaaaaacagcataaatctagccattggaaaatgtgcacagccaacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttgtccccacaggaaaaacagcataaatctagccattggaaaatgtgcacagccaacac 342
Query: 244 tggtttacaatgctttttaaacttcatacacaagactgtagagacacgatgtagctctct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tggtttacaatgctttttaaacttcatacacaagactgtagagacacgatgtagctctct 282
Query: 304 ttaaagtccattttcccccttcagtaaaaataaatttgtgttgtctcataaccctagaat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttaaagtccattttcccccttcagtaaaaataaatttgtgttgtctcataaccctagaat 222
Query: 364 acagaacacaaatatggaaaaacaaaacaaaacaaaacaaaaaaagccttctagaaatca 423
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 221 acagaacacaaatatgga-----aaaacaaaacaaaacaaaaaaagccttctagaaatca 167
Query: 424 ccacaggaggagaggagaaaatcagaaaagtatacaaagcactcaaagctgcaagagtgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ccacaggaggagaggagaaaatcagaaaagtatacaaagcactcaaagctgcaagagtgg 107
Query: 484 aggatgccaggagaggggggagggtttcaagagattctaggcaagccctttgatgacgtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 aggatgccaggagaggggggagggtttcaagagattctaggcaagccctttgatgacgtc 47
Query: 544 accccacatacataatgctacagcagtcagcacaggcctcctgctt 589
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 accccacatacataatgctacagcagtcagcacaggcctcctgctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_e07.g1 MSMg01no545_e07.g1 CHROMAT_FILE:
MSMg01no545_e07.g1 PHD_FILE: MSMg01no545_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:12 2005
(556 letters)
>mm_chr3_129061891_129062846
Length = 956
Score = 899 bits (465), Expect = 0.0
Identities = 480/485 (98%)
Strand = Plus / Minus
Query: 1 agtggcaaggtcttggccatgtctacacgtagttggacagtggctgacacttccagctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 agtggcaaggtcttggccatgtctacacgtagttggacagtggctgacacttccagctct 426
Query: 61 gaacaggtgctgctgtgaagatccctgcttagatgtcacagaattgaacagtgtcaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaacaggtgctgctgtgaagatccctgcttagatgtcacagaattgaacagtgtcaccag 366
Query: 121 gaagtgtcatggaattgaatagtgtcaccaggaagtgtccaggttcctctggcctccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaagtgtcatggaattgaatagtgtcaccaggaagtgtccaggttcctctggcctccacc 306
Query: 181 tcagcagcctcggatctactaaagagagctcagatgagccccggggccagagcaagcagt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcagcagcctcagatctactaaagagagctcagatgagccccggggccagagcaagcagt 246
Query: 241 ccagagtttcactagagcaagcaaagaggcaaggatacagtctgaggggctggggagagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccagagtttcactagagcaagcaaagaggcaaggatacagtctgaggggctggggagagg 186
Query: 301 gttcattacatccagtgtcggctgcctgagcctgaggatttgagtagagattcccagcat 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 185 gttcattacatccagtgtcggctgcctgagcctgaggatttgagtagagtttcccagcat 126
Query: 361 ctatggagaaagccaggcatggtgggtacttgtaactcagtgctaggtggtggagacaag 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 125 ctatggagaaagccaggcatggtggatacttgtaactcagtgctaggtggtggagacaag 66
Query: 421 ttaatcagttctctgatgcttggtgctcggctagtccagctagttggccagcaccagttt 480
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tggatcagttctctgatgcttggtgctcggctagtccagctagttggccagcaccagttt 6
Query: 481 caggg 485
|||||
Sbjct: 5 caggg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
