BAC Information

Click to search

BAC

Clone NameMSMg01-545G17
Chromosome3 (Build37)
Map Location 117,196,068 - 117,196,475
singlet/doubletsinglet
Overlap genenone
Upstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545G17.T7 (MSMg01no545_g17.b1)MSMg01-545G17.TJ (MSMg01no545_g17.g1)
ACCAG610487AG610488
length737749
length of high quality
(start - end)
408 (302 - 709)---
definitionCHROMAT_FILE: MSMg01no545_g17.b1 PHD_FILE: MSMg01no545_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:22 2005CHROMAT_FILE: MSMg01no545_g17.g1 PHD_FILE: MSMg01no545_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCT
CTCGCATACTTTTTACATGAACGAGTGTTGTATTTTGTCACACGCTTTAG
GCTTGCGTGCAGCTGCCTTCACCTGTCTCATTTACACTTTTAAGGAAACT
TATGATCCCATTGGTCTCATCTCAGCCATTTAGGGCAATCTGTCTGCTGT
AAGGTCAGTTTGAGGGTAAATTTTACTTCTTCTCCAGTCTTCGTATTTCT
TGCCACTTAAAGCACCACATTCACAGATTCAAGGCCTTATGACACGAGCA
GTATGTGTGAAAAGTTCATTGTTTTGATCACCATGGAATGCCTAGAAAAT
ATGCCTTGAATCTCTTATTGCACAGGAGTATCTAATTAATGGGTTTGCTG
AATATGGAATTCTAGGTTGATAATTCCACTCACAACCTGTAATATATAAC
TTTATTCTCTTATAGCCAGCACACTATTCTTTAATTCAGATTATATTCTG
AGTCTCAAGAAAATTTAAAGAATTTCTTAGAACTGATGACATAAAATTTT
ACAACCATATACCTCTCTATTTAGATATATTTTATTCACTGTTTGGGGCT
CTGAAACAGGGCATTCAATTCTGGAGACCATATTCTTTACTACTGAGGGT
GTATACTAACTATTCAAATTATTTTTAAGATTTTTTTCTGATTTCTCTAT
CTGGAATTTAAGGTTTGATGGTTAGAGACCTTCCATA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGCTCCAGCCATTGTTCTGACATTTTCTGAAAGGTATA
ATTTTTAAAATAGTTCTAAGTATTTGCATCATGGTTAAGCACTCTTGTCT
GACTTTGGTTAATTCGCATGCATCTTGAATTTTTTCCTGGACTTTATACA
TTGTCACAGCCTTGGATTCATGATGCTTAAATGTAATAGCACAAGTGATG
TTAACTTTGACCCTGATTAGTCTCTATTAATTTATAACTCTTTTAATCTG
ACCAGATTTAGGAAGGTGAAAAACTTTATCACTGACTTATGTAATGTTAA
GGCCTCCAAGGGGAAATTCACTCCCGTCTGAGTCCTTTTGAATGGGTATA
GGACCAATAACCTTGAACAACTGTATAGACCTAGACACCTACCCTGCCTT
TGCTTGGCATTATGGCCATATCCTTTAATTCAATCCTACGAAGCACATTT
GCCATTGCTAATGCTTTCTAAACCATGTCTTTAAAGATTGTCAAGACATG
CGAAGTTTGCTCTACATTTCCAAAAGAATATAACTGCTATAGAGATTTGC
AATTCATATAAATGAGATTTTTTTTTTAATTTGGCTTTCAGATGACATAT
TTTGACCTCTTCTGAATTGAGATTGGGCAACTGAGATCCATTTGGAAGTA
ACACATAAGCCTTTAGGTTTAATTATATGCTGATTTCTGTTGAAATTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_g17.b1 MSMg01no545_g17.b1 CHROMAT_FILE:
MSMg01no545_g17.b1 PHD_FILE: MSMg01no545_g17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:22 2005
         (408 letters)



>mm_chr3_117195868_117196675
          Length = 808

 Score =  766 bits (396), Expect = 0.0
 Identities = 405/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgtgtgaaaagttcattgttttgatcaccatggaatgcctagaaaatatgccttgaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tatgtgtgaaaagttcattgttttgatcaccatggaacgcctagaaaatatgccttgaat 260

                                                                       
Query: 61  ctcttattgcacaggagtatctaattaatgggtttgctgaatatggaattctaggttgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttattgcacaggagtatctaattaatgggtttgctgaatatggaattctaggttgat 320

                                                                       
Query: 121 aattccactcacaacctgtaatatataactttattctcttatagccagcacactattctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattccactcacaacctgtaatatataactttattctcttatagccagcacactattctt 380

                                                                       
Query: 181 taattcagattatattctgagtctcaagaaaatttaaagaatttcttagaactgatgaca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 taattcagattatattctgagtctcatgaaaatttaaagaatttcttagaactgatgaca 440

                                                                       
Query: 241 taaaattttacaaccatatacctctctatttagatatattttattcactgtttggggctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaaattttacaaccatatacctctctatttagatatattttattcactgtttggggctc 500

                                                                       
Query: 301 tgaaacagggcattcaattctggagaccatattctttactactgagggtgtatactaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaaacagggcattcaattctggagaccatattctttactactgagggtgtatactaact 560

                                                           
Query: 361 attcaaattatttttaagatttttttctgatttctctatctggaattt 408
           ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 attcaaattatttttaagatttttttctgttttctctatctggaattt 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)