BAC Information

Click to search

BAC

Clone NameMSMg01-545L22
Chromosome3 (Build37)
Map Location 47,918,671 - 48,054,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383850, LOC100039426, LOC666202
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545L22.T7 (MSMg01no545_l22.b1)MSMg01-545L22.TJ (MSMg01no545_l22.g1)
ACCAG610733AG610734
length733793
length of high quality
(start - end)		581 (39 - 619)228 (66 - 293)
definitionCHROMAT_FILE: MSMg01no545_l22.b1 PHD_FILE: MSMg01no545_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:48 2005CHROMAT_FILE: MSMg01no545_l22.g1 PHD_FILE: MSMg01no545_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,918,671 - 47,919,251)(48,054,179 - 48,054,406)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATGT
CTTTTACCTTGATGTCATGGTGATTACTATGAGAGCATCTGCACTATAAT
GTCTGGTAGTGGTAAAGAAAGGAAAACCTTCAAATTCCAGTATTCTGGGT
GTTATGAAAACTAAGCGATTCCTTTTGATAACAAAGTTTGAATATTATGT
ATGCTTTGAATATGCAAGATTCAGTTCACAGAAAACAATATGAGTAAGAT
CTAAAGGAAATGGTCACCATTTTCAAGAGCCTTTGTGAAATCGAGATGAG
ATTTAGTGTTTAAAGTCCAGAATGACACGTAGAAAAGAAAAGGAAACTGA
ACCTATGAGGATAAAACTATAGTGATAATTGTTTCTGCACATATCTCTTG
ATTGGATAAGCAATAACTAATATTTGGATTTATAATGTACCTATAAGCAT
CAAGATGATTGTATAGATTTGTTTCATTTGTACTCATTAATGCAATTTCA
ATGGTATATTGATCCGGCTAGACAGCAGTTATATAGGGAATACAAGGGAA
ACAGGCAGCAAGTATGAAGTTAATGCAGAAGAGGAAAATTCACACTTCGA
AAGTTTAATGAGCAAATATTCTCAGATCATTAAATTTCTAATTTATTTTC
AAATTTTTGTGCTTTAGGCTTCTAGATTTTAGTGAGTTCAATTTATTGTG
CTATCTATTGCAACACTAAGATTAGTGAAACTT

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGAGAGAATCTAGTTCTGACTGGATAGTATCATT
CTGATTGAAATATGTTCAGCCATTCACTTCTCTGTTCCACATGATTGCAA
GTGTAGAGACAGTCACATTTCTACTGTGTTGAAGTATCAGCTCTGTGAAA
GAGTGTAACAGTGACACTTTCAGTTGCTATCTACTTTATGAAATGTGATT
TAAAAAAAATTGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGTC
NTATTTTTGTTTTATTATTGATAACGTATAGAGTTACTTACCTNCTCTAT
TTTTAATTTTTTTGAGTTTGTTCCTCTTTTTCTTGATGTGTTCTTTGATG
CTATTGATGGTTATTAACATTTATCTATACTTGTATTGTCATGTTCCCTT
GTTTTTTTTTTTTTTGGATTAATTATTTTTTCATTCACATGTACTCGACT
ACATTTAATTTCATTTATTTTAATTTTCGCTACGATAACAAATTTAGTAT
CTCCGCACATTATCTTGTGTTTTTATTTAGCTTTTTAATAACCGTTTGAT
ATATTTTAAGTTCTCTAATTATCTCTTTTTTCATTTGTCTCTTTTTATTA
GATCCTTTTTTAATTATTACTTTTTTTACTATAGATCTTACGATTTTCTT
TTCTAATTACGTACTCTNAGCGCATATTCAACACTTACTACAGTTGTTTG
TTTGTTTATTACAATAATAACCGTTTCCTATTTCATATTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_l22.b1 MSMg01no545_l22.b1 CHROMAT_FILE:
MSMg01no545_l22.b1 PHD_FILE: MSMg01no545_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:48 2005
         (581 letters)



>mm_chr3_47918471_47919451
          Length = 981

 Score = 1108 bits (573), Expect = 0.0
 Identities = 579/581 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctcatgtcttttaccttgatgtcatggtgattactatgagagcatctgcactata 60
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctcatgtcttaaaccttgatgtcatggtgattactatgagagcatctgcactata 260

                                                                       
Query: 61  atgtctggtagtggtaaagaaaggaaaaccttcaaattccagtattctgggtgttatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtctggtagtggtaaagaaaggaaaaccttcaaattccagtattctgggtgttatgaa 320

                                                                       
Query: 121 aactaagcgattccttttgataacaaagtttgaatattatgtatgctttgaatatgcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactaagcgattccttttgataacaaagtttgaatattatgtatgctttgaatatgcaag 380

                                                                       
Query: 181 attcagttcacagaaaacaatatgagtaagatctaaaggaaatggtcaccattttcaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcagttcacagaaaacaatatgagtaagatctaaaggaaatggtcaccattttcaaga 440

                                                                       
Query: 241 gcctttgtgaaatcgagatgagatttagtgtttaaagtccagaatgacacgtagaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctttgtgaaatcgagatgagatttagtgtttaaagtccagaatgacacgtagaaaaga 500

                                                                       
Query: 301 aaaggaaactgaacctatgaggataaaactatagtgataattgtttctgcacatatctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggaaactgaacctatgaggataaaactatagtgataattgtttctgcacatatctct 560

                                                                       
Query: 361 tgattggataagcaataactaatatttggatttataatgtacctataagcatcaagatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattggataagcaataactaatatttggatttataatgtacctataagcatcaagatga 620

                                                                       
Query: 421 ttgtatagatttgtttcatttgtactcattaatgcaatttcaatggtatattgatccggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtatagatttgtttcatttgtactcattaatgcaatttcaatggtatattgatccggc 680

                                                                       
Query: 481 tagacagcagttatatagggaatacaagggaaacaggcagcaagtatgaagttaatgcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagacagcagttatatagggaatacaagggaaacaggcagcaagtatgaagttaatgcag 740

                                                    
Query: 541 aagaggaaaattcacacttcgaaagtttaatgagcaaatat 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaggaaaattcacacttcgaaagtttaatgagcaaatat 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_l22.g1 MSMg01no545_l22.g1 CHROMAT_FILE:
MSMg01no545_l22.g1 PHD_FILE: MSMg01no545_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:48 2005
         (228 letters)



>mm_chr3_48053979_48054606
          Length = 628

 Score =  441 bits (228), Expect = e-128
 Identities = 228/228 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagaatctagttctgactggatagtatcattctgattgaaatatgttcagccattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cagagagaatctagttctgactggatagtatcattctgattgaaatatgttcagccattc 369

                                                                       
Query: 61  acttctctgttccacatgattgcaagtgtagagacagtcacatttctactgtgttgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 acttctctgttccacatgattgcaagtgtagagacagtcacatttctactgtgttgaagt 309

                                                                       
Query: 121 atcagctctgtgaaagagtgtaacagtgacactttcagttgctatctactttatgaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 atcagctctgtgaaagagtgtaacagtgacactttcagttgctatctactttatgaaatg 249

                                                           
Query: 181 tgatttaaaaaaaattgagtgggtgggtaggggagtgggggtgggtgg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgatttaaaaaaaattgagtgggtgggtaggggagtgggggtgggtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |