Query= MSMg01no545_m13.b1 MSMg01no545_m13.b1 CHROMAT_FILE:
MSMg01no545_m13.b1 PHD_FILE: MSMg01no545_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(602 letters)
>mm_chr3_67254310_67255309
Length = 1000
Score = 1122 bits (580), Expect = 0.0
Identities = 593/598 (99%), Gaps = 2/598 (0%)
Strand = Plus / Minus
Query: 5 gaattctacagacaatgggcaaacccaacaccaacaatcacactaagacatgtcctcaac 64
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 800 gaattctacagacaatgggcaaacccaacaccaacaatcacgctaagacatgtcctcaac 741
Query: 65 aggactttaagacactgtctatctcaactgacaaagttttacacccagtgggaaattcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aggactttaagacactgtctatctcaactgacaaagttttacacccagtgggaaattcca 681
Query: 125 gagctctggcatctttaactgatgtgttttaaaagcagggcttatgctgagaccacacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagctctggcatctttaactgatgtgttttaaaagcagggcttatgctgagaccacacag 621
Query: 185 gacagacatacaaggaaaactgcaaaggaagtttcataaacagaggtgaatggaagccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gacagacatacaaggaaaactgcaaaggaagtttcataaacagaggtgaatggaagccat 561
Query: 245 tgtactaaaaatacttttaattcctcacatatgcaagcaatatgaaaacacaggaaaggc 304
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 560 tgtactaaaaatacttttaattcctcacatatacaagcaatatgaaaacacaggaaaggc 501
Query: 305 agaacaaaacactgctgcctccaggcttccgagttattgtccctccccactcaagctttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agaacaaaacactgctgcctccaggcttccgagttattgtccctccccactcaagctttg 441
Query: 365 ttcctaacagctgtggtgtgagtgtctctctctgatgacacatatttgcagcttgagtct 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 ttcctaacagctgtggtgtgagtgtctctctctgatgaca--tatttgcagcttgagtct 383
Query: 425 ggcatgaaatatctgtgacaattagtaactctctggcctgctccgcccagtttatttggc 484
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggcacgaaatatctgtgacaattagtaactctctggcctgctccgcccagtttatttggc 323
Query: 485 aaagctgccaagttttgtgactacccattcatcctccaagagacaaacggtgtttcttca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaagctgccaagttttgtgactacccattcatcctccaagagacaaacggtgtttcttca 263
Query: 545 aaaacttcctatttttcactccaatgaatagttttccctgggtacactgagctggacc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaaacttcctatttttcactccaatgaatagttttccctgggtacactgagctggacc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space: 586080
Effective search space used: 586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_m13.g1 MSMg01no545_m13.g1 CHROMAT_FILE:
MSMg01no545_m13.g1 PHD_FILE: MSMg01no545_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(555 letters)
>mm_chr3_67077645_67078599
Length = 955
Score = 1050 bits (543), Expect = 0.0
Identities = 552/555 (99%)
Strand = Plus / Plus
Query: 1 agtgccctcttctgatctctgtgaacaccaggcacacacatggtacatagacatacaggc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgctctcttctgatctctgtgaacaccaggcacacacatggtacatagacatacaggc 260
Query: 61 aggcaatgtactcatatccataaaacaaaattaatgtaaaaactactttccatttgcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaatgtactcatatccataaaacaaaattaatgtaaaaactactttccatttgcaga 320
Query: 121 tcattttaatttggtttattccaattaagtattaactcccttcttcagtacttactggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattttaatttggtttattccaattaagtattaactcccttcttcagtacttactggct 380
Query: 181 gcatatgaattatgtctaattcttagaattcttcataatacaagttagtcttctattatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatatgaattatgtctaattcttagaattcttcataatacaagttagtcttctattatg 440
Query: 241 ccataccaaccaactcatacattaggctctcatttatctaccaatagctagttggcctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccataccaaccaactcatacattaggctctcatttatctaccaatagctagttggcctag 500
Query: 301 agaagtcatccaacattaagagctaaatagtttggtctggtcaatccttatgaaaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagtcatccaacattaagagctaaatagtttggtctggtcaatccttatgaaaaatat 560
Query: 361 gctggaataagaggatctgctaagccagacaccatttaacacaactcagatttagagaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggaataagaggatctgctaagccagacaccatttaacacaactcagatttagagaca 620
Query: 421 aaccttcattcaacagtattctcaccagctcatataatgcttcttggggtataaaacctc 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acccttcattcaacagtattctcaccagctcatataatgcttcttggggtataaaacctc 680
Query: 481 agccagccatcatcctgagtgaggtaacacaatcacaaagaaactcacatgatatgtact 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agccagccatcatcctgagtgaggtaacacaatcacaaagaaactcacatgatatgtact 740
Query: 541 cactaataagtggat 555
|||| ||||||||||
Sbjct: 741 cactgataagtggat 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
