Query= MSMg01no545_m14.b1 MSMg01no545_m14.b1 CHROMAT_FILE:
MSMg01no545_m14.b1 PHD_FILE: MSMg01no545_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(652 letters)
>mm_chr3_81419318_81420369
Length = 1052
Score = 1183 bits (612), Expect = 0.0
Identities = 625/630 (99%), Gaps = 2/630 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtagctgcagtacttaatatctaatatttacatgttttaaatattatatatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaattcagtagctgcagtacttaatatctaatatttacatgttttaaatattatatatat 574
Query: 65 agactttccattcgtagaaaaatgtaatcacttctacgccctattagttaatttgtgtga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 agactttccattcgtagaaaaatgtaatcacttctacgccctattagttaatttgtgtga 514
Query: 125 ctcccattaatgctaccctaatgaaacatgtacaccagtagagtctgagttgcattccga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcccattaatgctaccctaatgaaacatgtacaccagtagagtctgagttgcattccga 454
Query: 185 ctaagtacagtgagcacagagatgtaaatatgatactatctgttagattcctagaataag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ctaagtacagtgagcacagagatgtaaatatgatactatctgttagattcctagaataag 394
Query: 245 gtaattgtccaagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtaattgtccaagtacatcctttgtttcttttgaccccaaattttgaagaaatgatgttc 334
Query: 305 cttgcttattttatagaaataagccataaattcaggccaaccattccactacctgtattc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cttgcttattttatagaaataagccataaattcaggccaaccattccactacctgtattc 274
Query: 365 tttacaaaataactcatatttaatgtattacattgttttattttttaaatagtccttgtc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttacaaaataactcatatttaatgtattacattgttttattttttaaatagtccttgtc 214
Query: 425 aatattgtgtgtgctctaccccagccttgaacagctggatcagaccttgtttaccacagt 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 213 aatattgtgtgtgctctaccccagccttgaacggctggatcagaccttgtttatcacagt 154
Query: 485 tgctagctcacctatggtggagtctttcaacctaggtaaagtcctgccacttctgcagct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 tgctagctcacctatggtggagtctttcaacctaggtaaagtcctgccacttctgcagct 94
Query: 545 tcctacaagaagccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tcctacaagaagccactacctgctgaacagctgagcttgtcttcctgatgaggtcctggc 34
Query: 605 aacntgtgtgtgtgtgtgtgtgggtgtgtg 634
|| |||||||||||||||||| |||||||
Sbjct: 33 aa--tgtgtgtgtgtgtgtgtgtgtgtgtg 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space: 668964
Effective search space used: 668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_m14.g1 MSMg01no545_m14.g1 CHROMAT_FILE:
MSMg01no545_m14.g1 PHD_FILE: MSMg01no545_m14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:51 2005
(609 letters)
>mm_chr3_81263847_81264855
Length = 1009
Score = 982 bits (508), Expect = 0.0
Identities = 577/612 (94%), Gaps = 23/612 (3%)
Strand = Plus / Plus
Query: 1 tcacaccaagctgggccagagatctccgtggaaagcctctggtacccaggcccacagttt 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaccaagctgggccagagatttccgtggaaagcctctggtacccaggcccacagttt 260
Query: 61 gcctacatggatcctatcccaggtagagagtatttctatgtatctgtgactgacacaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctacatggatcctatcccaggtagagagtatttctatgtatctgtgactgacacaaag 320
Query: 121 ggatgggaagagggcgagactgaatcctctgataggtttagtaaaatccacagggacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgggaagagggcgagactgaatcctctgataggtttagtaaaatccacagggacctg 380
Query: 181 agatagtgagggagtgcagcgtaatggaagcaatctgctacatggatgttgatgataata 240
|||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||
Sbjct: 381 agatagtgagggagtgcagcctaatggaagcaatctgatacagggatgttgatgataata 440
Query: 241 gaaagattgtgtaggagggcaggaaggaaagagtaaattgtatatataagtccaggtcca 300
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gaaagaatgtgtaggagggcaggaaggaaagagtaaattgcatatataagtccaggtcca 500
Query: 301 atgtggctactgtggatcccaggtactctaaagaatcaattaggaatcaaatagatttta 360
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 atgtggctactgtggatcccaggtattctaaagaatcaattaggaatcaaatagattttt 560
Query: 361 aaaaaagcattaatttctgcagatgggatagatccctggggg-gaggggggctctctaga 419
|||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct: 561 aaaaaagcattaatttctgcagatgggatagatccctgggggcgggggggg-------g- 612
Query: 420 tggcctttccttcagtctctgctctatttttt--gtccatttcctttagacaggaacaat 477
|| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 613 -gg-----------gtctctgctctattttttttgtccatttcctttagacaggaacaat 660
Query: 478 tctgggttaaaaattttgaggtaagtgggtggccccattcctcaactggaagctgtgcct 537
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 661 tctgggttaaaatttttgaggtaagtgggtggccccatccctcaactggaagctgtgcct 720
Query: 538 atctactggaggtggtctctacagcttctatcttcccattggtcctgggaacctcttgct 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 atctactggaggtggtctctacagcttctatcttcccattggtcctgggaacctcttgct 780
Query: 598 ccctggcgtctg 609
||||||| ||||
Sbjct: 781 ccctggcatctg 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
