XXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAAAACT
AAAAACTACATAATTTTAATATTTGGAATTTCATACACTGAAATATAATT
CTGTCTATCTAGCATTCTCTTCCTCCAACTCCTACCATATCTTCCTCTAT
ATCTCTGCTTCCAACTTTCATTCTGTCTGTTTCTCTTTCAATAAGTCCAT
TTACTGCTGCTCAAAGGTCGATGTCTGTGGGGTACTAACTGGAGTACTCA
AATCCTACAAGTTGCCATATCCTCACAAAAGAATGATTCTCCTTCATATG
AAATTATCTGCTGCCATTATTTCTCCAGTAAGGCAAGAGCCTGAGAGAAT
TCTGTCTACACAATTTTGAGTGGCTTAATCTTGTTCAGGTCTCATAAAGG
TAACCATAGCAGCTGAGAGTTCCTGTGTGCAATAGCTATGCCATGCCTGG
AAGACAGCACTCTTCCCTGTTCTCTTGTTTCATACATTATTTTGGGTCTG
TTTAAGATTGTGTTCCCTGAGCCTTGGTGGTGGTTCTCCTTGGGGCTGGA
CACCTTGTTTTTTGTTTTCAGTATTCTGTGAGTATGAATCATTCTGTTAA
TTTCTGCTCACCCTGAAAGCAGCTTTTCTTTCTACAGTCTTAAAAGCAGC
CAAAGTTTATGGATAAATGCAAATATTTGCAAGTCAATTTGGAAACACAA
CTAGTTTTCAAAATAACAATAGCTTCTATCTCATGACCTATGGCCTCCTC
AACCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTACTGAGGAATACCAAATGGCTGATAAGCACCTG
AAAAAGTGTTCAACATCCTTAATCATCAGTGAAATGCAAATCAAGCAATC
CTGAGATTCCACTTCACACTAGTCAAATGACTACGATAAAAAATTCAGGT
GACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCACCATTG
TTGGTGGGATTTCAAGCTGGTATAACCACTCTAGAAATCAGTTTGGTGGT
TCCTCAGAAAATTGGACATAGTACTACCAGAAGATCCAGCAATACCACTC
CTAGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGGACACATGCTC
AACTATGTTCATATCAGCCTTATTTATAGTAACCAGAAGCTGGAAAGAAC
CCAGATGTCTCCAAACAGAGGAATGGATACAGGAAATGTGGTACATTTAC
ACAATGGAGTACTACTAAACTATTAAAAACGATGAACTTATGAAATTCTT
ACACAAATGGATGTATCTGGAGGATATCATCCTGAGTGTGGTAACCCAAT
CACAAAAGAACACACATGATATGCACTCACTGGTAAGTGGATATTAGCCC
AGAAATTTAGAATACCCAAGGTGTAATTTGAAAAACACATGAAACTCAAG
AAGGGAAGACCAAACTGTGGATACTTTGATCCTTCTTAGAAGACAGAAC

Query= MSMg01no545_n13.b1 MSMg01no545_n13.b1 CHROMAT_FILE:
MSMg01no545_n13.b1 PHD_FILE: MSMg01no545_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:56 2005
         (680 letters)



>mm_chr3_110302810_110303888
          Length = 1079

 Score = 1286 bits (665), Expect = 0.0
 Identities = 671/673 (99%), Gaps = 1/673 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcaaaactaaaaactacataattttaatatttggaatttcatacactgaaatataa 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcaaaactaaaaactacataattttaatatttggaatttcatacactgaaatataa 267

                                                                       
Query: 68  ttctgtctatctagcattctcttcctccaactcctaccatatcttcctctatatctctgc 127
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttctgtctttctagcattctcttcctccaactcctaccatatcttcctctatatctctgc 327

                                                                       
Query: 128 ttccaactttcattctgtctgtttctctttcaataagtccatttactgctgctcaaaggt 187
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 328 ttccaactttcattctgtctgtttctctttcaataagtccatttactgctgctcaa-ggt 386

                                                                       
Query: 188 cgatgtctgtggggtactaactggagtactcaaatcctacaagttgccatatcctcacaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cgatgtctgtggggtactaactggagtactcaaatcctacaagttgccatatcctcacaa 446

                                                                       
Query: 248 aagaatgattctccttcatatgaaattatctgctgccattatttctccagtaaggcaaga 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aagaatgattctccttcatatgaaattatctgctgccattatttctccagtaaggcaaga 506

                                                                       
Query: 308 gcctgagagaattctgtctacacaattttgagtggcttaatcttgttcaggtctcataaa 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcctgagagaattctgtctacacaattttgagtggcttaatcttgttcaggtctcataaa 566

                                                                       
Query: 368 ggtaaccatagcagctgagagttcctgtgtgcaatagctatgccatgcctggaagacagc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggtaaccatagcagctgagagttcctgtgtgcaatagctatgccatgcctggaagacagc 626

                                                                       
Query: 428 actcttccctgttctcttgtttcatacattattttgggtctgtttaagattgtgttccct 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actcttccctgttctcttgtttcatacattattttgggtctgtttaagattgtgttccct 686

                                                                       
Query: 488 gagccttggtggtggttctccttggggctggacaccttgttttttgttttcagtattctg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gagccttggtggtggttctccttggggctggacaccttgttttttgttttcagtattctg 746

                                                                       
Query: 548 tgagtatgaatcattctgttaatttctgctcaccctgaaagcagcttttctttctacagt 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgagtatgaatcattctgttaatttctgctcaccctgaaagcagcttttctttctacagt 806

                                                                       
Query: 608 cttaaaagcagccaaagtttatggataaatgcaaatatttgcaagtcaatttggaaacac 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cttaaaagcagccaaagtttatggataaatgcaaatatttgcaagtcaatttggaaacac 866

                        
Query: 668 aactagttttcaa 680
           |||||||||||||
Sbjct: 867 aactagttttcaa 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space:   716230
Effective search space used:   716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)