BAC Information

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BAC

Clone NameMSMg01-545N20
Chromosome3 (Build37)
Map Location 47,918,671 - 48,054,406
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383850, LOC100039426, LOC666202
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545N20.T7 (MSMg01no545_n20.b1)MSMg01-545N20.TJ (MSMg01no545_n20.g1)
ACCAG610824AG610825
length751746
length of high quality
(start - end)		651 (35 - 685)229 (64 - 292)
definitionCHROMAT_FILE: MSMg01no545_n20.b1 PHD_FILE: MSMg01no545_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:57 2005CHROMAT_FILE: MSMg01no545_n20.g1 PHD_FILE: MSMg01no545_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,918,671 - 47,919,317)(48,054,180 - 48,054,406)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATGT
CTTAAACCTTGATGTCATGGTGATTACTATGAGAGCATCTGCACTATAAT
GTCTGGTAGTGGTAAAGAAAGGAAAACCTTCAAATTCCAGTATTCTGGGT
GTTATGAAAACTAAGCGATTCCTTTTGATAACAAAGTTTGAATATTATGT
ATGCTTTGAATATGCAAGATTCAGTTCACAGAAAACAATATGAGTAAGAT
CTAAAGGAAATGGTCACCATTTTCAAGAGCCTTTGTGAAATCGAGATGAG
ATTTAGTGTTTAAAGTCCAGAATGACACGTAGAAAAGAAAAGGAAACTGA
ACCTATGAGGATAAAACTATAGTGATAATTGTTTCTGCACATATCTCTTG
ATTGGATAAGCAATAACTAATATTTGGATTTATAATGTACCTATAAGCAT
CAAGATGATTGTATAGATTTGTTTCATTTGTACTCATTAATGCAATTTCA
ATGGTATATTGATCCGGCTAGACAGCAGTTATATAGGGAATACAAGGGAA
ACAGGCAGCAAGTATGAAGTTAATGCAGAAGAGGAAAATTCACACTTCGA
AAGTTTAATGAGCAAATATTCTCAAATCATTAAATTTCTAATTTATTTTC
AAATTTTTGTGCTTTAGGCTTCTAGATTTTAGTGAGTTCAATTTATTGTG
CTATCTATTGCAACACTAAGATTAGTGAAACTTATGCATTTACATTTTAA
N

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCAGAGAGAATCTAGTTCTGACTGGATAGTATCATTCT
GATTGAAATATGTTCAGCCATTCACTTCTCTGTTCCACATGATTGCAAGT
GTAGAGACAGTCACATTTCTACTGTGTTGAAGTATCAGCTCTGTGAAAGA
GTGTAACAGTGACACTTTCAGTTGCTATCTACTTTATGAAATGTGATTTA
AAAAAAATTGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGNNNNNNNNNN
NNNNNNTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNNNNTNNNNNTNNTNTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTNTTTTTNTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTNTTNTTTNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTNTTNNNTNTTTTTTNTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_n20.b1 MSMg01no545_n20.b1 CHROMAT_FILE:
MSMg01no545_n20.b1 PHD_FILE: MSMg01no545_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:57 2005
         (651 letters)



>mm_chr3_47918467_47919517
          Length = 1051

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatgtcttaaaccttgatgtcatggtgattactatgagagcatctgcactata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatgtcttaaaccttgatgtcatggtgattactatgagagcatctgcactata 264

                                                                       
Query: 65  atgtctggtagtggtaaagaaaggaaaaccttcaaattccagtattctgggtgttatgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtctggtagtggtaaagaaaggaaaaccttcaaattccagtattctgggtgttatgaa 324

                                                                       
Query: 125 aactaagcgattccttttgataacaaagtttgaatattatgtatgctttgaatatgcaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aactaagcgattccttttgataacaaagtttgaatattatgtatgctttgaatatgcaag 384

                                                                       
Query: 185 attcagttcacagaaaacaatatgagtaagatctaaaggaaatggtcaccattttcaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attcagttcacagaaaacaatatgagtaagatctaaaggaaatggtcaccattttcaaga 444

                                                                       
Query: 245 gcctttgtgaaatcgagatgagatttagtgtttaaagtccagaatgacacgtagaaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcctttgtgaaatcgagatgagatttagtgtttaaagtccagaatgacacgtagaaaaga 504

                                                                       
Query: 305 aaaggaaactgaacctatgaggataaaactatagtgataattgtttctgcacatatctct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaggaaactgaacctatgaggataaaactatagtgataattgtttctgcacatatctct 564

                                                                       
Query: 365 tgattggataagcaataactaatatttggatttataatgtacctataagcatcaagatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgattggataagcaataactaatatttggatttataatgtacctataagcatcaagatga 624

                                                                       
Query: 425 ttgtatagatttgtttcatttgtactcattaatgcaatttcaatggtatattgatccggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgtatagatttgtttcatttgtactcattaatgcaatttcaatggtatattgatccggc 684

                                                                       
Query: 485 tagacagcagttatatagggaatacaagggaaacaggcagcaagtatgaagttaatgcag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagacagcagttatatagggaatacaagggaaacaggcagcaagtatgaagttaatgcag 744

                                                                       
Query: 545 aagaggaaaattcacacttcgaaagtttaatgagcaaatattctcaaatcattaaatttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagaggaaaattcacacttcgaaagtttaatgagcaaatattctcaaatcattaaatttc 804

                                                          
Query: 605 taatttattttcaaatttttgtgctttaggcttctagattttagtga 651
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taatttattttcaaatttttgtgctttaggcttctagattttagtga 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_n20.g1 MSMg01no545_n20.g1 CHROMAT_FILE:
MSMg01no545_n20.g1 PHD_FILE: MSMg01no545_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:58 2005
         (229 letters)



>mm_chr3_48053980_48054608
          Length = 629

 Score =  439 bits (227), Expect = e-128
 Identities = 227/227 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagagagaatctagttctgactggatagtatcattctgattgaaatatgttcagccattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cagagagaatctagttctgactggatagtatcattctgattgaaatatgttcagccattc 368

                                                                       
Query: 61  acttctctgttccacatgattgcaagtgtagagacagtcacatttctactgtgttgaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acttctctgttccacatgattgcaagtgtagagacagtcacatttctactgtgttgaagt 308

                                                                       
Query: 121 atcagctctgtgaaagagtgtaacagtgacactttcagttgctatctactttatgaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atcagctctgtgaaagagtgtaacagtgacactttcagttgctatctactttatgaaatg 248

                                                          
Query: 181 tgatttaaaaaaaattgagtgggtgggtaggggagtgggggtgggtg 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgatttaaaaaaaattgagtgggtgggtaggggagtgggggtgggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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