Query= MSMg01no546_b09.b1 MSMg01no546_b09.b1 CHROMAT_FILE:
MSMg01no546_b09.b1 PHD_FILE: MSMg01no546_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:15 2005
(689 letters)
>mm_chr3_77418142_77419230
Length = 1089
Score = 982 bits (508), Expect = 0.0
Identities = 526/532 (98%)
Strand = Plus / Minus
Query: 158 cagggtcctttgtcttccagaagcgttgcagttttataaggtcccatttgttgattcttg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 cagggtcctttgtcttccagaagcgttgcagttttataaggtcccatttgttgattcttg 1030
Query: 218 atcttacagcacaaaccattgtttttctgttcaggaattttttcccctgtgcccatatct 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 atcttacagcacaaaccattgtttttctgttcaggaattttttcccctgtgcccatatct 970
Query: 278 tcaaggctcttccccactttctcctctataagtttctgtgtctctggttttaggtgaagt 337
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 969 tcaaggctcttccccactttctcctctataagtttcagtgtctctggttttaggtgaagt 910
Query: 338 tctttgatcacttagacttgtggctctaagttttatgacatcaacagaggtacgaaccca 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 tctttgatcacttagacttgtggctctaagttttatgacatcaacagaggtacgaaccca 850
Query: 398 tattcaatgtacaaagaaaaatatataaatatggtaaaatatgagaaacaaaaattaaag 457
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 849 tattcaatggacaaagaaaaatatataaatatgttaaaatatgagaaacaaaaattaaag 790
Query: 458 cacttaaaatgttaaaatagagaatcctataacttccattcataattcatacctgggtct 517
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 789 cacttaaaatgttaaaatagagaatcctataacttccattcataaatcatacctgggtct 730
Query: 518 cctttatctcttatattgcaagctacaataaagataagagtgacaaccaatggccttgat 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 cctttatctcttatattgcaagctacaataaagataagagtgacaaccaatggccttgat 670
Query: 578 aacaaactatggctgctatatgtattgatgatctgtggctgcaagcaccaaatctaaaat 637
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 669 aacaaactatggctgctatatgtattgatgatctgtggctgcaagcagcaaatctaaaat 610
Query: 638 gaataatattgagtattttcctcttcatctgtccgttttcaccaattcttta 689
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaataatattcagtattttcctcttcatctgtccgttttcaccaattcttta 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_b09.g1 MSMg01no546_b09.g1 CHROMAT_FILE:
MSMg01no546_b09.g1 PHD_FILE: MSMg01no546_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:16 2005
(653 letters)
>mm_chr3_77243369_77244422
Length = 1054
Score = 1249 bits (646), Expect = 0.0
Identities = 652/654 (99%), Gaps = 1/654 (0%)
Strand = Plus / Plus
Query: 1 acataacttgaaaggtaacataaatatttttaccacgtggtgataatattgcagggttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataacttgaaaggtaacataaatatttttaccacgtggtgataatattgcagggttct 260
Query: 61 ttcacaatatataagaggcatgcaaattgaggaagtgttaattattcttttattctccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacaatatataagaggcatgcaaattgaggaagtgttaattattcttttattctccgg 320
Query: 121 ccacttgtagcatagtaaactttccgtttgtcaaaaggacatgtaagaataacattttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccacttgtagcatagtaaactttccgtttgtcaaaaggacatgtaagaataacattttac 380
Query: 181 tctgtaacataaactaaaaaaaaaaaa-tgtaatgttaagataaagaacaaattatttta 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtaacataaactaaaaaaaaaaaaatgtaatgttaagataaagaacaaattatttta 440
Query: 240 gtgtagctatacattcgaagaaatcatttaaaatgattaaatcaagccattaattcaatt 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtagctatacattcaaagaaatcatttaaaatgattaaatcaagccattaattcaatt 500
Query: 300 aatgaccactaaacatgggaacatttgacaaatatttcaagatttttttcaaaatgcaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgaccactaaacatgggaacatttgacaaatatttcaagatttttttcaaaatgcaat 560
Query: 360 agacagactttaaagtataaccctttagcgaattacaaatggtaacatgttttacttctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agacagactttaaagtataaccctttagcgaattacaaatggtaacatgttttacttctg 620
Query: 420 ttataaattattgtaattacatcaaaccatggaaagcaatagtactctttttatttgaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttataaattattgtaattacatcaaaccatggaaagcaatagtactctttttatttgaat 680
Query: 480 accagcaatacacttcaataagcataattgtgtatagaaggctattgttcatactattaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accagcaatacacttcaataagcataattgtgtatagaaggctattgttcatactattaa 740
Query: 540 catagaatcatcttgttgtcgtgcaattccacagctaaatatgcatccccagagtaagca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catagaatcatcttgttgtcgtgcaattccacagctaaatatgcatccccagagtaagca 800
Query: 600 ctgcagcactccctgtcttactatgttagagttgctcagacagtaagataaggc 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctgcagcactccctgtcttactatgttagagttgctcagacagtaagataaggc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space: 671292
Effective search space used: 671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
