Query= MSMg01no546_d10.b1 MSMg01no546_d10.b1 CHROMAT_FILE:
MSMg01no546_d10.b1 PHD_FILE: MSMg01no546_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
(693 letters)
>mm_chr3_89676658_89677750
Length = 1093
Score = 1311 bits (678), Expect = 0.0
Identities = 687/690 (99%)
Strand = Plus / Plus
Query: 4 ggaattctccctgtatgaggattgagggcaggctgctacaccgtggactgaaaagcattc 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccctgtaagaggattgagggcaggctgctacaccgtggactgaaaagcattc 263
Query: 64 agacccaggaactcatgttctgggaacagaccctaaaaatgactgtggtggtctgaataa 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 agacccaggaactcatgttctgggaacagaccctagaaatgactgtggtggtctgaataa 323
Query: 124 gaatggcccccatagactcatagatttgaatgcttagtcaccagggaatggttctatttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatggcccccatagactcatagatttgaatgcttagtcaccagggaatggttctatttg 383
Query: 184 aaaggattagaaggatttagaggtgtggccttgttggaggaagtgtgtcactgagggggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaggattagaaggatttagaggtgtggccttgttggaggaagtgtgtcactgagggggt 443
Query: 244 gggacttgaggttttaaaagcccatgccagtcccactgtttctctctgtctctgcctaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gggacttgaggttttaaaagcccatgccagtcccactgtttctctctgtctctgcctaag 503
Query: 304 gatgagaatgtagctctcagcctcttctccatgcctgccatgtctgctgccatgctcccc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gatgagaatgtagctctcagcctcttctccatgcctgccatgtctgctgccatgctcccc 563
Query: 364 gcctccaattaaaggtggtggtcatggtgtcttcatggcaatagaatagtgactaagaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcctccaattaaaggtggtggtcatggtgtcttcatggcaatagaatagtgactaagaca 623
Query: 424 atgatataaacatggaagaactttagacacaaagatgtccagcacagtgctgttttgtaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atgatataaacatggaagaactttagacacaaagatgtccagcacagtgctgttttgtaa 683
Query: 484 aaacaaaacatcttccagtgcctgataacagttaacctgggaatctgtacttataagaga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aaacaaaacatcttccagtgcctgataacagttaacctgggaatctgtacttataagaga 743
Query: 544 agcctattgctaataaatgtgaagtttataaagaatgtgaaaatatttacaaagtgaaaa 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agcctattgctaataaatgtgaagtttataaagaatgtgaaaatatttacaaagtgaaaa 803
Query: 604 tatttttaaaaggtaggattcgagggtttttattattgttattatttttaatcataggta 663
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatttttaaaaggtaggatttgagggtttttattattgttattatttttaatcataggta 863
Query: 664 tgtgtgcctgtgtgtgggtatgtgcttgta 693
||||||||||||||||||||||||||||||
Sbjct: 864 tgtgtgcctgtgtgtgggtatgtgcttgta 893
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_d10.g1 MSMg01no546_d10.g1 CHROMAT_FILE:
MSMg01no546_d10.g1 PHD_FILE: MSMg01no546_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:26 2005
(636 letters)
>mm_chr3_89860893_89861928
Length = 1036
Score = 509 bits (263), Expect = e-148
Identities = 300/319 (94%), Gaps = 16/319 (5%)
Strand = Plus / Minus
Query: 1 cagatccagaggatctgattgctctttttggcctcttgcacacaaatggtacatataaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 cagatccagaggatctgattgctctttttggcctcttgcacacaaatggtacatataaac 247
Query: 61 ccatgcaagcacacaatacgtatagtataaaaataaggacagaggatggtggggtatgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccatgcaagcacacaatacgtatagtataaaaataaggacagaggatggtggggtatgtc 187
Query: 121 tttaatcccagtactagcaggcaaaggcagtagatctctgaattgaaggtctgccaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tttaatcccagtactagcaggcaaaggcagtagatctctgaattgaaggtctgccaaggc 127
Query: 181 taatatcaagactttgtctttaaaaaaaaaaaaa---caaccccccccccaaaaaaaaca 237
||||||||||||||||||||| ||||||||| | |||||||||| ||||||
Sbjct: 126 taatatcaagactttgtcttt----aaaaaaaaaccccctcccccccccc----aaaaca 75
Query: 238 aacaaaaccacaaagcttgggcagtggtggtacatgcctttaatcccagcacttgggagg 297
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ---aaaa-cacaaagc-cgggcagtggtggtacatgcctttaatcccagcacttgggagg 20
Query: 298 cagaggcagatgcagcctg 316
|||||||||||||||||||
Sbjct: 19 cagaggcagatgcagcctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
