XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGGCTACAGCATGGTTACCACCCATTAAAACTGCAGTGGGAGAGAACAGA
GAGGGACAGAAAAATAGTGTATGTCCTTCTATGAACACAAAAGGTGAAAA
AGGTATGTGGACGCAGGGATGAATGGAGATAAAAAAGAATATGACCTAAC
TTTACCCTAGTCATTCACTAATCTCTTAGCAATTTTCTTCCAAAATAAAA
GAAGAGGAAAATGGATTTTGCCCCCAGTTTCACACGAGGAATATTTCTCC
TACCCACACATTCCTATTTCTGGTTTCCCAGAGGAATGGGCACCAGTAAG
GGACTCATCCAGAGACAGGGCCTCTTGGAGCCATGCAGTGGAGTAGTGTC
CTTCCTTCCTCCCAGGATGCAGTCAGATTCTTGGCTGCCACTCAAGCATA
TGTTCTCCAGCTTACATTTGTAACCAGAAAGCAGCATGGGACTTGCAGTT
TACATTACATTACATGGGGAAACAAAACAAACAAAAACACAAACAAACAA
GCAAACCTTATTTCAACAAACAAAAACAAAAACAAACAAACAAACACACA
AACAAACAAGCAAACCTTATTTCTGACATCATCTCTCNAGATGAAAAGCC
AGAGCTTGGGCCTGCCTACAGCATGTTACAGGAATTGACTGTGATTTAAT
CTTGANGGTACAGGGATATCTATCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGTTTAGCTTTGTACCCCATTTTTAATTGGTTTAT
TTGGGTTGTTGGTGTCTAACTTCTGAAGTTCTTTATATATTTTAGATATT
AGCCTTCTGTCAGATGTAAAGTTCGTGAAGACATTGTCCCAATCTGTGAG
CTCCTGTTTTGTCCTATTGACAGTGCCCTTTGCCTTTCAGAAGCTTTTCA
GTTTCATGAAGTCCCATTTTTTAGTTGTTGATCTTATGGCCTGAGCTATG
GATGTTCAGGAAGTTGTCTTCTATTCCAATGCGTTCAAGTCTATTCCCCC
ACTTCCTATTTTATTAGATTTAGTGTATCTGGTTTTAGGTTGAGGTCTTT
AATCCATTCAGACTTGAGTTTTGTATAGGTGATAGATGTGGATTTATTTG
CATTCTTCTATATTCAGACTGCCAGCTAGACCAGCACCATTTGTTGAAGG
TACTTTCTTTTTTCTATTGTATAATTTTGGCTTCTTTGTCAAAAATTGAG
TGTTCATAGGTATGCTGGTTTATTTCTGGGACTTTGATTTGATTCCATTG
ATCAACCTGTCTATTCCTATATCAATACTATGCAGTTTTCATTACTATTG
CTCTGAGGTACAGTTTGAAGTCAGGGATGGAACCATCAGAAATACTTTTA
TTGTACAGGATTGTTTCAGTTTTCCTGCTTTTTTTCCTTTTTTCATN

Query= MSMg01no546_d21.b1 MSMg01no546_d21.b1 CHROMAT_FILE:
MSMg01no546_d21.b1 PHD_FILE: MSMg01no546_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:28 2005
         (543 letters)



>mm_chr3_157411515_157412457
          Length = 943

 Score =  949 bits (491), Expect = 0.0
 Identities = 514/525 (97%), Gaps = 9/525 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggctacagcatggttaccacccattaaaactgcagtgggagagaacagagagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaattcaggctacagcatggttaccacccattaaaactgcagtgggagagaacagagagg 609

                                                                       
Query: 65  gacagaaaaatagtgtatgtccttctatgaacacaaaaggtgaaaaaggtatgtggacgc 124
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 608 gacagaaaaatagtgtatgtccttctctgaacacaaaaggtgaaaaaggtatgtggacgc 549

                                                                       
Query: 125 agggatgaatggagataaaaaagaatatgacctaactttaccctagtcattcactaatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agggatgaatggagataaaaaagaatatgacctaactttaccctagtcattcactaatct 489

                                                                       
Query: 185 cttagcaattttcttccaaaataaaagaagaggaaaatggattttgcccccagtttcaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttagcaattttcttccaaaataaaagaagaggaaaatggattttgcccccagtttcaca 429

                                                                       
Query: 245 cgaggaatatttctcctacccacacattcctatttctggtttcccagaggaatgggcacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cgaggaatatttctcctacccacacattcctatttctggtttcccagaggaatgggcacc 369

                                                                       
Query: 305 agtaagggactcatccagagacagggcctcttggagccatgcagtggagtagtgtccttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtaagggactcatccagagacagggcctcttggagccatgcagtggagtagtgtccttc 309

                                                                       
Query: 365 cttcctcccaggatgcagtcagattcttggctgccactcaagcatatgttctccagctta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cttcctcccaggatgcagtcagattcttggctgccactcaagcatatgttctccagctta 249

                                                                       
Query: 425 catttgtaaccagaaagcagcatgggacttgcagtttacattacattacatggggaaac- 483
           ||||||||||||||||||||||||||||||||||||||||||||    | ||||||||| 
Sbjct: 248 catttgtaaccagaaagcagcatgggacttgcagtttacattac----cgtggggaaaca 193

                                                        
Query: 484 aaaacaaaca---aaa-acacaaacaaacaagcaaaccttatttc 524
           ||||||||||   ||| ||||||||||||||||||||||||||||
Sbjct: 192 aaaacaaacaaacaaacacacaaacaaacaagcaaaccttatttc 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)