Query= MSMg01no546_e24.b1 MSMg01no546_e24.b1 CHROMAT_FILE:
MSMg01no546_e24.b1 PHD_FILE: MSMg01no546_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:34 2005
(639 letters)
>mm_chr3_152363041_152364079
Length = 1039
Score = 1060 bits (548), Expect = 0.0
Identities = 575/584 (98%), Gaps = 1/584 (0%)
Strand = Plus / Minus
Query: 56 agctacaaacgtttgtttatcaggtgtgatcaatcattgagcattacaaaacagcatcgt 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1039 agctacaaacgtttgtttatcaggtgtgatcaatcattgagcattacaaaacagcatcgt 980
Query: 116 catctgtaaacggggctaaagaactgcaagatcgagttacaatggttaaggcaatcataa 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979 catctgtaaacggggctaaagaactgcaagatcgagttacaatggttaaggcaatcataa 920
Query: 176 tgctttaagttgctgctgagttccattcataactatccttgattgcatgaagcccttagg 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 tgctttaagttgctgctgagttccattcataactatccttgattgcatgaagcccttagg 860
Query: 236 ccttgagttggacatgtttgaaaaaaatgagttagctagtaggagaattataagtaggaa 295
|||||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||
Sbjct: 859 ccttgagttggacatgtttg-aaaaaatgagttagctagtgggggaattataagtaagaa 801
Query: 296 gcaatgctgtgactcaaaagcagatcattggagtcacttaaaatcacttggggagccact 355
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 800 gcaatgctgtgaatcaaaagcagatcattggactcacttaaaatcacttggggagccact 741
Query: 356 gtactccaggttaggatgagaaaactagaaagccaggcttaggggagcatgcagtgaggg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtactccaggttaggatgagaaaactagaaagccaggcttaggggagcatgcagtgaggg 681
Query: 416 aagacccaaggaatggctgctgaagacactaagcaaaaaattacaaggttcctaggggga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aagacccaaggaatggctgctgaagacactaagcaaaaaattacaaggttcctaggggga 621
Query: 476 aatcagactagcaatagacctgagaaaagggaaagctgggagaagagaacagatccagag 535
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct: 620 aatcagactagcaatagacctgagaaaagggaaacctgggagaagagaacagacccaggg 561
Query: 536 atgcagaggtcattagcatctttgtcatacaattttaaaacatcttttatttctccatgg 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgcagaggtcattagcatctttgtcatacaattttaaaacatcttttatttctccatgg 501
Query: 596 gaacctctcagaaccttggcaaactgcttgctgtaccatatcat 639
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaacctctcagaaccttggcaaactgcttgctgtaccatatcat 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_e24.g1 MSMg01no546_e24.g1 CHROMAT_FILE:
MSMg01no546_e24.g1 PHD_FILE: MSMg01no546_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:34 2005
(570 letters)
>mm_chr3_152177003_152177972
Length = 970
Score = 1069 bits (553), Expect = 0.0
Identities = 565/569 (99%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 1 aaagccatctcctccagggccaggggaaagatggatccgtgctatgaagagaagacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccatctcctccagggccaggggaaagatggatccgtgctatgaagagaagacatcc 260
Query: 61 ctctccttgtggctagcaaccagaggcctgcccctttggcgtggctatctcatagagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctccttgtggctagcaaccagaggcctgcccctttggcgtggctatctcatagagcta 320
Query: 121 gctctacagatgtttaagagacaatgggaatgtccaagaggccagactcaatctcgcccc 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctaaagatgtttaagagacaatgggaatgtccaagaggccagactcaatctcgcccc 380
Query: 181 tcagtgttccctcatgactttgccctggagacctggagacctatatcgagagacttcaga 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagtgtcccctcatgactttgccctggagacctggagacctatatcgagagacttcaga 440
Query: 241 gccctgaacaggagtaggcacggaggggacgatgctctggatttcacacagcagtggcta 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 gccctgaacaggagtaggcacggaggggacgatgctctggatttcacacagcagtgacta 500
Query: 301 ttttaggggaagaaatatcaaaaggagaattaccatatgggaactcgataacacatacaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttaggggaagaaatatcaaaaggagaattaccatatgggaactcgataacacatacaa 560
Query: 361 taaactttgcctaaaaacagttttaactttttctatgtgtactggctggttttatgtgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaactttgcctaaaaacagttttaactttttctatgtgtactggctggttttatgtgtc 620
Query: 421 aactgacacaaactggagttatcacagagaaaggagcctcccttgaggaaatgcctccat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactgacacaaactggagttatcacagagaaaggagcctcccttgaggaaatgcctccat 680
Query: 481 gagatccagctgtaaggcatttcctcaattagtgt-ggggtggggggagggtcccttgtg 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gagatccagctgtaaggcatttcctcaattagtgtcggggtggggggagggtcccttgtg 740
Query: 540 ggtgggaccatctctgggctggtagacct 568
|||||||||||||||||||||||||||||
Sbjct: 741 ggtgggaccatctctgggctggtagacct 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
