Query= MSMg01no546_k22.b1 MSMg01no546_k22.b1 CHROMAT_FILE:
MSMg01no546_k22.b1 PHD_FILE: MSMg01no546_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:03 2005
(671 letters)
>mm_chr3_82263544_82264616
Length = 1073
Score = 1125 bits (582), Expect = 0.0
Identities = 655/700 (93%), Gaps = 38/700 (5%)
Strand = Plus / Minus
Query: 7 gaattctctgttgctcatggaatgtcataatgaaagatttcatctcattcacttttgtcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1067 gaattctctgttgctcatggaatgtcataatgaaagatttcatctcattcacttttgtcc 1008
Query: 67 aggaatgttagaattccccctctttctctctttctctctctcccctctttctctccatca 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 aggaatgttagaattccccctctttctctctttctctctctcccctctttctctccatca 948
Query: 127 t------------------------------tatatatatatatatgaaatatgtataga 156
| |||||||||||||||||||||||||||||
Sbjct: 947 ttttatatatatatatatatatatatatatatatatatatatatatgaaatatgtataga 888
Query: 157 aatatgtctatataatgttttagcctcaaaggaactaggacaaacttttcttttgatata 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 aatatgtctatataatgttttagcctcaaaggaactaggacaaacttttcttttgatata 828
Query: 217 aaactcattccccttaggaattactacagaaaacagtggaaggaaaagtacacataaagg 276
||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |||
Sbjct: 827 aaactcattccccttaggaattactacaggaaacagtggaagaaaaagtccacatagagg 768
Query: 277 aaactgattttttttttctggtgagagattgagggaga---tagaagaaatttgagtaaa 333
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 767 aaactga-tttttttttctggtgagagattgagggagatagtagaagaaatttgagtaaa 709
Query: 334 gctagtttcttcagaatttatgtttagttttgagactctctctaaatttctgccattaat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 gctagtttcttcagaatttatgtttagttttgagactctctctaaatttctgccattaat 649
Query: 394 tttctatccttcaagatcttgctcaattttgatacgacttccaaaacttaaaagaa-ctc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 648 tttctatccttcaagatcttgctcaattttgatacgacttccaaaacttaaaa-aatctc 590
Query: 453 ttataattcagtgtactgatttatcattccttctcttagatgcttcaaacgtctgaataa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 ttataattcagtgtactgatttatcattccttctcttagatgcttcaaacgtctgaataa 530
Query: 513 gtggggtgttcatttagtgtgcattcattatttctcactctatctttttgtagaacttct 572
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 529 gtggggtgttcatttagtgtgcattcattatttctcactccatctttttgtaaaacttct 470
Query: 573 catttagcatgaggaaaagcaatttaagaatatc-aaatgttctcaattgagggaaacat 631
|||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 469 catttagcatgaggaaaagcaatttaagaatatcaaaat-ttcccaattgagggaaacat 411
Query: 632 aaaaccaattatctgtagttagatttccccatttttccca 671
||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaaaccaattatctgtagttagatttccccatttttccca 371
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1073
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1063
Effective search space: 702643
Effective search space used: 702643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_k22.g1 MSMg01no546_k22.g1 CHROMAT_FILE:
MSMg01no546_k22.g1 PHD_FILE: MSMg01no546_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:03 2005
(693 letters)
>mm_chr3_82120893_82121993
Length = 1101
Score = 1216 bits (629), Expect = 0.0
Identities = 679/701 (96%), Gaps = 10/701 (1%)
Strand = Plus / Plus
Query: 1 tctgctgttgatctctagcctaggaagaatgaggttttatagaagagacaaattcatcac 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctgttgatctctagcctatgaagaatgaggttttatagaagagacaaattcatcac 260
Query: 61 catcatctatcttcctgtagctcctgactttctcaattcagactcttggctgtaggagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcatctatcttcctgtagctcctgactttctcaattcagactcttggctgtaggagga 320
Query: 121 aaacagaaacctaggaaactcatcactttcttgagcccacacatccctagctccaccaca 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagaaacctaagaaactcatcactttcttgagcccacacatccctagctccaccaca 380
Query: 181 cccaaccccctcagctttgtttgtcttctgtataagtattcagacatttcattttattta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaaccccctcagctttgtttgtcttctgtataagtattcagacatttcattttattta 440
Query: 241 attggaaagttaggaagaatacaattattgagtttttgtttgtttgttt---------tg 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 attggaaagttaggaagaatacaattattgagtttttgtttgtttgtttgttttgttttg 500
Query: 292 ttttgttgttgttgttttgaagctagaatttacttgcatagtttttaaaagaatgaaact 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgttgttgttgttttgaagctagaatttacttgcatagtttttaaaagaatgaaact 560
Query: 352 gagctggctttatgcctaagtatcccattgtaaccaaagacatataatatcatgtcttct 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagctggctttatgcctaagtatcccattgtaaccaaagacatataatatcatgtcttct 620
Query: 412 cattattaagctgtggaggaatcttcacaggtttaagtgacttatacccctaaaataata 471
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 cattattaagctgtggaggaatcttcacaggtttaagtgacttgtacccctaaaataata 680
Query: 472 agtctgttgaggctgagaaatgaagatttcaaatcccaggctagactgtactacaggaaa 531
|| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 681 agactgttgaggctgagaaatgaagatttcaaatcccgggctagactatactacaggaaa 740
Query: 532 agttactgactaaagtgtgtgtatgtggtgtgcatattttgagtattatgcgataaatta 591
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtggctgactgaagtgtgtgtatgtggtgtgcatattttgagtattatgcgataaatta 800
Query: 592 gtctactggacagaaagtactagttttaacacttaaaacgtgccactgaattttagttca 651
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 gtctactgaacagaaagtactagttttaacacttaaaacatgccactgaattttagttca 860
Query: 652 catttgaagcttttcatggaatataaattaggttacataaa 692
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 861 catttgaagcttta-atggaatataaattaggttacataaa 900
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1101
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1091
Effective search space: 745153
Effective search space used: 745153
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
