BAC Information

Click to search

BAC

Clone NameMSMg01-546K23
Chromosome3 (Build37)
Map Location 16,015,212 - 16,015,805
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039985, LOC751864, Sirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484
Downstream geneYthdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K23.T7 (MSMg01no546_k23.b1)MSMg01-546K23.TJ (MSMg01no546_k23.g1)
ACCAG611450AG611451
length7391,571
length of high quality
(start - end)		628 (39 - 666)---
definitionCHROMAT_FILE: MSMg01no546_k23.b1 PHD_FILE: MSMg01no546_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:03 2005CHROMAT_FILE: MSMg01no546_k23.g1 PHD_FILE: MSMg01no546_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TGTTTTCTCACGGTCTATGTGTGTATAGTCTTTATGTCCCATTCAAGAAA
TGCTGCCGAATTTTTGTCAATTTCCTGTCTAATATCATATCTAAATCTTG
GCCAAATTATTGTTGAGACCTGTTCAAATAGCCTGATGGTAAATCTGGAA
AGGTGTTCTACCTTCTACCATGTTGAAGATCCCAGTCTGGGTGGGTTCCC
TGTGGGGTCAGGGGCCAGTTTCTTAGCCTTTGTCTATGGTGAAGAGAACC
TGTAAGAAGTTTGGGTAGGTGACTGCACTGAGTCCCCTAAGGAACATGGA
AAGGAGTGGTTGCTGCTTCTCAGTGGGCTGTGTGTGGAAAGACAGTGTCA
GTGAAGACCCTCTCTTTACAACACAGAGACCATATCTGTTCAGACAAGGA
AGAGCGAGCACTTCTCCTGGCAAGAAGGTTAGCCATTAATTGAACAAAAT
AAGTGACCAGGAGTCTATTCCAAGCTCTGGTAAGGGATATATCTATCCAC
TTGGGGTTTCTCCTGTCTAGTCTGTCCAACCATGGAGCCCAGCTCTCTGG
GAACTCAACTCCCAATACATGGAGAGCCCGGTGAGGGTGGTAAAACACAT
GGAGCCAGTTCTGGGAAAAAAGAAAGTAAGCAAGAAATTGAACTCAGGAC
CTCTAGAAGAGAGACATTGTTCTTAACCTCTGATCTATN

CACGCAGCAGTAGCCCGTGTGACGCGGACAGCGCCTGCGTGACGTGTTGA
TAGATTATAGGTGTATGAGCACTNTATACAGAGAGGGAGCTGCTGTCGCG
CACATAGTAGATATCAAGNCTCACTCGCGGGCGCTTATCGTTTATAGTCT
ACGAGCCCGCTCCGTCGTCGTCGCGGTATGTTCCCTTTNTGCCGCGTGTG
ATTCGATTGAGGTGAGCACCTGTTACTGACGGAGCCGATATGTATATATG
TGATAATACGCGCGACTGTCGCGCTCGCGAGTGCTGTATCNCTATATGTA
CTATCTCCTCACGCACCTTTCTTATTGCAGACACACTTATACTACGACGT
ATATGGACAGTACACGAGCGGCGTCCACCGGAACGCCGCGTTGTGTAGGC
ATATATGTTATGGCTTTCGTCTCATACGTTGGCGCTAATATCCTCTGCGC
GCGACACTGTTTCACTACGGTCTATACGCTGCGTTTTTGTCGACGTCGCT
TGATGTCGTGTCGTGCGATATTGTGTACTATTACTCGGATTATCATATTT
GTGCCAGCACGCGCTTGTCTATTATATATATCGGCGGCTTGTGCGCAGCC
TTGTGGTGATATCTATTCNGTACGCAGACTATACATAGACCACGACAGAG
TGTTGCGTCGCGTGCTTATCGCGCGCCCGTAATGTGGCGGCTGTCGAGAG
CGTCGTGTCTCGTTGTGCGCNTGCTATTAACCGTGTACATATGTGTGCCT
CCTTCGCCTCTACACTTACGTGCGCTGCTTTATATGGCTGTCTACGGAAA
CACGCATCGTTTTTATATATAGTATTTCAGGTATACACAGACATGTGGTG
TCTCGACGCGGCAGACGTCGCGATCCTGTGTAGCACACGTATATAGTATA
TATCCGCACGGCGTTGCTCACGAATATACTTTCAGATGTTGATCACATGC
ATTGCACGATTACGGATTCGAGTTTCTAGAGCATATGCGCGTCTACCGCG
ACTCTGTGTATATACCCGCGTTATATACTCTCCGCCTACTGTATATACGG
TTTGTGAGACGCGCGGTATGAAGTATCGGCATATGACTCTATACTCGCAG
CGACAGNGAATGTATGCACGAGACAGGCTCGAGGGTCAATACATGGCGGA
TGCAGTCACAGTACTGCGACGGCGCGATCAGGAGTCTGATCGCGCACCGT
GTAGTGCTTAAGATCGGTCTGTGTGTATACGCGGTCGAGTGCGTGTGAGG
ATATTGGTAATACGTCAGNGTTGTGATGAATGATGGAGGCGANTATAATG
CTGCGCGTNGATTCAATAGCTAGAGGAAGATACGATTATAGTGGAACATC
AGCGCTCTCCGCATGTGTACGATATATAAGGTACTGTCACGCACGAGGTT
GTACAAGGGCGGAGTGGTATACAGTGCTTGTGAGCGGGAGTATCATGAAG
TACGAGTAGTCGCGGTGTTGTGATACTCGCGCCGCGCACGCTAAGTACAN
TACTGGGTGTGAACGANGAGAGAAGACGATATANTGACATNTGGATGCTG
TGNTTGATGAGTCGCGATCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k23.b1 MSMg01no546_k23.b1 CHROMAT_FILE:
MSMg01no546_k23.b1 PHD_FILE: MSMg01no546_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:03 2005
         (628 letters)



>mm_chr3_16015008_16016033
          Length = 1026

 Score =  832 bits (430), Expect = 0.0
 Identities = 559/618 (90%), Gaps = 28/618 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgttttctcacggtctatgtgtgtatagtctttatgtcccattcaagaaatg 64
           |||||||||||||||||| || ||| ||| |||||| ||||||| |||| ||||||||||
Sbjct: 205 gaattctctgttttctcagggcctacgtgagtatagcctttatgacccaatcaagaaatg 264

                                                                       
Query: 65  ctgccgaatttttgtcaatttcctgtctaatatcatatctaaatcttggccaaattattg 124
           |||| ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 265 ctgctgaacttttgtcaatttcctgtctaatatcatacctaattcttggccaaattattg 324

                                                                       
Query: 125 ttgagacctgttcaaatagcctgatggtaaatctggaaaggtgttctaccttctaccatg 184
           |||||||||||||||||||||||||| ||||||||||||||   |||| |||| ||||||
Sbjct: 325 ttgagacctgttcaaatagcctgatg-taaatctggaaaggccctctatcttccaccatg 383

                                                                       
Query: 185 ttgaagatcccagtctgggtgggttccctgtggggtcaggggccagtttcttagcctttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgaagatcccagtctgggtgggttccctgtggggtcaggggccagtttcttagcctttg 443

                                                                       
Query: 245 tctatggtgaagagaacctgtaagaagtttgggtaggtgactgcactgagtcccctaagg 304
           ||||||||||||||||||| |||||| ||||||||||||| |||||| ||||||||||||
Sbjct: 444 tctatggtgaagagaacctataagaattttgggtaggtgaatgcactaagtcccctaagg 503

                                                                       
Query: 305 aacatggaaaggagtggttgctgcttctcagtgggctgtgtgtggaaagacagtgtcagt 364
           | |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 504 agcatggaaaggagtggttgctgcttctcactgggctgagtgtggaaagacagtgtcagt 563

                                                                       
Query: 365 gaagaccctctctttacaacacagagaccatatctgttcagacaaggaagagcgagc--- 421
            ||||||                      ||||||||||||||||||||||||||||   
Sbjct: 564 -aagacc----------------------atatctgttcagacaaggaagagcgagcgag 600

                                                                       
Query: 422 -acttctcctggcaagaaggttagccattaattgaacaaaataagtgaccaggagtctat 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cacttctcctggcaagaaggttagccattaattgaacaaaataagtgaccaggagtctat 660

                                                                       
Query: 481 tccaagctctggtaagggatatatctatccacttggggtttctcctgtctagtctgtcca 540
           |||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct: 661 tccaagctctggtaagggatatatctctccacttgtggcttctcctgtctaatctgtcca 720

                                                                       
Query: 541 accatggagcccagctctctgggaactcaactcccaatacatggagagcccggtgagggt 600
           |||||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 721 accatggagccctgctctctgggaactcaactgcctacacatggagagcccggtgagggt 780

                             
Query: 601 ggtaaaacacatggagcc 618
           ||||||||||||||||||
Sbjct: 781 ggtaaaacacatggagcc 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1026
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1016
Effective search space:   627888
Effective search space used:   627888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |