Query= MSMg01no547_a21.b1 MSMg01no547_a21.b1 CHROMAT_FILE:
MSMg01no547_a21.b1 PHD_FILE: MSMg01no547_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:34 2005
(700 letters)
>mm_chr3_18744695_18745792
Length = 1098
Score = 1154 bits (597), Expect = 0.0
Identities = 671/701 (95%), Gaps = 13/701 (1%)
Strand = Plus / Plus
Query: 5 gaattccctagagactgatttcactaatacccaataactgtaaacttataaggggattaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctagagactgatttcactaatacccaataactgtaaacttataaggggattaa 264
Query: 65 tcagttcattaggtcacaccccgcaatgtcctcaccctggatgtataccacaaaaagagc 124
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 tcagttcattaggtcacagcccgcaatgtcctcaccctgggtgtataccacaaaaagagc 324
Query: 125 caaaactggcttcacccgcccaggcatttctcagtctaatcaagttaatacttaggataa 184
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 c-aaactggcttcacctgcccaggcatttctcagtctaatcaagttaatacttaggataa 383
Query: 185 gtaactatagcaaatcaaaatgtgttcggtgatctgatgatactcccagcaataggaata 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtaactatagctaatcaaaatgtgttcggtgatctgatgatactcccagcaataggaata 443
Query: 245 gatttctcaaagtcaatagggagagaaaagacttaaacaacaaagctagacttctgttac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gatttctcaaagtcaatagggagagaaaagacttaaacaacaaagctagacttctgttac 503
Query: 305 tttccttgttgatatgacaaagtacctggcagaaaagaggggaaagttcacttccaaggg 364
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttccttgttgatatgacaaaatacctggcagaaaagaggggaaagttcacttccaaggg 563
Query: 365 gattttagtcaccagagcagggaggccatgatggagtgacttggcctgtgatatagggag 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 564 gattttagtcaccagagcagggaagccatgatggagtgacttggcctgtgatatagg-ag 622
Query: 425 tgtacagtggtagcttattcaaatcttttcacatcttgacagaccaagaaatagagaaag 484
| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 623 tatacagtggtagcttattcacatcttttcacatcttgacagaccaagaattagagaaag 682
Query: 485 caaaccacaaacaaagacaagaacaacttcaaaa-tcccacccctgtgacccacttccac 543
||| |||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 683 caagccacaaacaaggacaagaacaacttcaaaaattccacccctgtgacccacttccac 742
Query: 544 cagctaagtctgctatcgagaggtacctcagacttaacatggcacaacaatctagagacc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cagctaagtctgctatcgagaggtacctcagacttaacatggcacaacaatctagagacc 802
Query: 604 aagaattcaaaacatg--------gggaacatttcagattcatattttatatatatacat 655
|||||||||||||||| |||||||||||||||||||| | |||||||||| ||
Sbjct: 803 aagaattcaaaacatgaatctgtggggaacatttcagattcatagtatatatatataaat 862
Query: 656 atgcatatatactataattaattatataaagataacttata 696
|| ||||||| ||||||||||||||||||||||| |||||
Sbjct: 863 at--atatatattataattaattatataaagataatttata 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1098
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1088
Effective search space: 750720
Effective search space used: 750720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_a21.g1 MSMg01no547_a21.g1 CHROMAT_FILE:
MSMg01no547_a21.g1 PHD_FILE: MSMg01no547_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:34 2005
(665 letters)
>mm_chr3_18906741_18907805
Length = 1065
Score = 1232 bits (637), Expect = 0.0
Identities = 658/665 (98%)
Strand = Plus / Minus
Query: 1 tttctcctttggggtttcttatttttgaagctttctactaaattcatcaccagataagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttctcctttggggtttcttatttttgaagctttctactaaattcatcaccagataagac 806
Query: 61 aaatatttgtctaaatgtccatgtaacaaatattttagaaaggtcctggttgccctgatt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 805 aaatatttgtctaaatgtccatgtaacaaatattttagaaaggtactggttgccctgatt 746
Query: 121 tcatggtgagtaatggttttggtgatgtgggaagccttacatgggtttcctccccagcct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 745 tcatggtgagtaatggttttggtgatgtggaaagccttacatgggtttcctccccagcct 686
Query: 181 tgccttagaaacatgtgaatgtagctgctggtttatggagtggggaatatccattcgtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 tgccttagaaacatgtgaatgtagctgctggtttatggagtggggaatatccattagtct 626
Query: 241 ctggtggcttgagcctacataaatgattccttagggcagtgagatggaaaactagaaatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggtggcttgagcctacataaatgattccttagggcagtgagatggaaaactagaaatc 566
Query: 301 taactagctgtatgccagacaaggactagactttcttgcataattaacgtgcgaagtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taactagctgtatgccagacaaggactagactttcttgcataattaacgtgcgaagtggg 506
Query: 361 agcattgctctagatggcctctctgcctcggtggctcgcacaatggtgaaggatggccgt 420
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 505 agcattgctctagatggcctctctgcctcggtggcttgcacaatggtgaaggatggccat 446
Query: 421 ttgtttatcagggagtctgagagtggcctttgtcttatttttacacctcattgcttctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtttatcagggagtctgagagtggcctttgtcttatttttacacctcattgcttctcc 386
Query: 481 atctcttttctcaaatctcatttaaaaggtatttagatatttcccccctgcacatctttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctcttttctcaaatctcatttaaaaggtatttagatatttcccccctgcacatctttc 326
Query: 541 ttaattctactatgtctctattgatgactgtgtgaggctccctcctggacactatcctcc 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaattttactatgtctctattgatgactgtgtgaggctccctcctggacactatcctcc 266
Query: 601 gcaggttttgccagtcttctttcactcagactttgctataaatgtctacaaatttagatt 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctggttttgccagtcttctttcactcagactttgctataaatgtctacaaatttagatt 206
Query: 661 gtgag 665
|||||
Sbjct: 205 gtgag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
