XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
GGAACTGGGGAAAAATAGGGGACCTAGCCCTCATTTTCACATTAACAATC
CTCTTTTGAAAGCCAAATTTCTAAAGCAGGTCATAAACAGTTTAATAGGA
TTACAAGAATTTTTGAAATGTTGAGAATTTCAAATAAACTCTCCAAATAT
TTTGAATGTAAATCACCCTTTTAAATAATGTGCATAAAAATTTAGTACAA
TATATGACCATATTTTGATATTTGATTAGTATGTTTAAAATTTATAACCA
GATAGTTTGTATGTATACACTGTATATTTTTATGGATTTCAAGGTAACTA
TTCAAGCATATAAATGTACACACACACACACACACACACACACACACACA
CACACACACACATATATATATATATATAAAGGAAATTTGATGATCAATAC
TGTTCATTAAAATTCAAACTTATGTGTATGTATTTCATTAGGTACCTCCA
AAAGTAATAAAGATACAGAGACGCATAGATACTGAAGTTACTTTGAAGGA
AAACAATCATAAACACTTTCAATTTTTAAATTCTTCATTCTTATCCTATC
TTAGAGACCAGAATAAGGAAGCCTAAAGGTTACAGGCGCAGAAATAAAAT
ATGGAGAAATGTGGGTGCCTTAAATACATAAATAACCCATACTAAAAGCA
TTCACACTTTTATCATAACTGTAACTAATCCCAAATAATATAATGG

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATTGCAAGGATGTTTACTACATCCAAGAAAACA
CAGAAAATAACTAGTTCCATACCAGCAAAAAATAAGGAAAGTGCATGCAC
ATGCACACACACACACACACACACACACACAAACACACACACACCACTAA
CATCAAAATAACAGAAAATAACTATCACTGGCCATTAATATCTCTCAATA
GCAGTGAACTCAATTTCCCAATAAAAATACATAGTCTATCAGAATGGATG
CAAAAACAGGATCCATTATTCTGTTGCATACAAGAAATACACTTCAGAAA
TAAAGATAGACATTACTTCACCTCAAAGTAAAAGGCTAGAAAAAAGTTTT
CAAGCAAATGGACCCAATAAACAGGCTGGAGTAGCCATTCTAATATCTAA
TTAAATAGACTTTCTACAAAAATTAACCAAAAGAGACTGGGAAGGACACT
TTGTACACATCAAAGGAAAAATCCACCAAAATTATATCCCAATTCTGAAC
ATCCAGTCCTCAAATGCAATACCCACATTTGTAAAAGAAACATTGCTAAA
GCTGACCTTGGGCATTAAACCCCACACATTAATAGTGGGAAGCTTCATCA
CCCAACAATCACCAATAGAAAATCATCCAAATAAAAACTATACAGAAGAG
AAATAATGAAACTAACAGACATTACAAATCAAACTATCCTAAA

Query= MSMg01no547_c18.b1 MSMg01no547_c18.b1 CHROMAT_FILE:
MSMg01no547_c18.b1 PHD_FILE: MSMg01no547_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:44 2005
         (701 letters)



>mm_chr3_76468673_76469773
          Length = 1101

 Score =  833 bits (431), Expect = 0.0
 Identities = 509/567 (89%), Gaps = 51/567 (8%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgaggaactggggaaaaataggggacctagccctcattttcacattaacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ggaattctctgaggaactggggaaaaataggggacctagccctcattttcacattaacaa 473

                                                                       
Query: 64  tcctcttttgaaagccaaatttctaaagcaggtcataaacagtttaataggattacaaga 123
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 tcctcttttgaaagccaaatttctaaagcaggtcataaacagtttaatcggattacaaga 413

                                                                       
Query: 124 atttttgaaatgttgagaatttcaaataaactctccaaatattttgaatgtaaatcaccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atttttgaaatgttgagaatttcaaataaactctccaaatattttgaatgtaaatcaccc 353

                                                                       
Query: 184 ttttaaataatgtgcataaaaatttagtacaatatatgaccatattttgatatttgatta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 352 ttttaaataatgtgcataaaaatttagtacaatatatgaccatattttggtatttgatta 293

                                                                       
Query: 244 gtatgtttaaaatttataaccagatagtttgtatgtatacactgtatatttttatggatt 303
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gtatatttaaaatttataaccagatagtttgtatgtatacactgtatatttttatggatt 233

                                                                       
Query: 304 tcaaggtaactattcaagcatataaatgtacacacaca-----------cacacacacac 352
           |||||||||||||||||||||||||||||||||| | |                      
Sbjct: 232 tcaaggtaactattcaagcatataaatgtacacagatatgtatgtatgt----------- 184

                                                                       
Query: 353 acacacacacacacacacacacacatatatatatatatat-----aaaggaaatttgatg 407
                                   ||||||||||||||||     |||||||||||||||
Sbjct: 183 ------------------------atatatatatatatatcaaaaaaaggaaatttgatg 148

                                                                       
Query: 408 atcaatactgttcattaaaattcaaacttatgtgtatgtatttcattaggtacctccaaa 467
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 147 atcaatactgttcattaaaattcaaacttacgtgtatgtatttcattaggtacctccaaa 88

                                                                       
Query: 468 agtaataaagatacagagacgcatagatactgaagttactttgaaggaaaacaatcataa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 87  agtaataaagatacagagacgcatagatactgaagttactttgaaggaaaacaatcatat 28

                                      
Query: 528 acactttcaatttttaaattcttcatt 554
           |||||||||||||||||||||||||||
Sbjct: 27  acactttcaatttttaaattcttcatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)