Query= MSMg01no547_d12.b1 MSMg01no547_d12.b1 CHROMAT_FILE:
MSMg01no547_d12.b1 PHD_FILE: MSMg01no547_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:47 2005
(691 letters)
>mm_chr3_12787302_12788393
Length = 1092
Score = 654 bits (338), Expect = 0.0
Identities = 355/361 (98%), Gaps = 1/361 (0%)
Strand = Plus / Minus
Query: 329 aagaatatttgttatttgggaagaataacagtaagcatact-tttttttatttactgata 387
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 889 aagaatatttgttatttgggaagaataacagtaagcatactatttttttatttactgata 830
Query: 388 aatgaaagatttatagggttttagttttattatatgtactgttaaaatcctaaatcatga 447
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 829 aatgaaagatttatagggttttagttttattatatttactgttaaaatcctaaatcatga 770
Query: 448 tgttttgattatttaggcaataagaagtacactgaatttgtggattttttttttcttttt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgttttgattatttaggcaataagaagtacactgaatttgtggattttttttttcttttt 710
Query: 508 aggaaagatagagaaaaggaacataaatttggataagtagagaggtagggatgacctggg 567
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 aggaatgatagagaaaaggaacataaatttggataagtagagaggtagggatgacctggg 650
Query: 568 cggagttgtgcgatgggaaaacatgtttaaagtatactatctaaattttttcattanaat 627
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 649 cagagttgtgcgatgggaaaacatgtttaaagtatacaatctaaattttttcattaaaat 590
Query: 628 aaatagcaaaagaaatacagaatctgtttttacaactttacttctgtgggcctttttttt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aaatagcaaaagaaatacagaatctgtttttacaactttacttctgtgggcctttttttt 530
Query: 688 t 688
|
Sbjct: 529 t 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1092
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1082
Effective search space: 736842
Effective search space used: 736842
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_d12.g1 MSMg01no547_d12.g1 CHROMAT_FILE:
MSMg01no547_d12.g1 PHD_FILE: MSMg01no547_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:47 2005
(668 letters)
>mm_chr3_12629786_12630853
Length = 1068
Score = 1185 bits (613), Expect = 0.0
Identities = 652/665 (98%)
Strand = Plus / Plus
Query: 1 aaagcacagaaagaaagaaaagaagagcagaaagatactatacctctagtaaaagttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcacagaaagaaagaaaagaagagcagaaagatactatacctctagtaaaagttaca 260
Query: 61 aatcacatcacaatgcccccagtgaaaataaccttgaaaacctaccagaaacattttaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcacatcacaatgcccccagtgaaaataaccttgaaaacctaccagaaacattttaaa 320
Query: 121 taaatagtgtaccatgttcaaatgacaagaatatattccaggataataaaaggagttgat 180
|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 321 taaatagtataccatgttcaaatgagaagaatatattccaggataatgaaaggagttgat 380
Query: 181 tacttagtacttacctttgaaatgtgttcaacccaagttataaagcctttataggggtac 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 tacttagtacttacctttgaaatgtgttcaacccaagttatgaagcctttataggggtac 440
Query: 241 catggaagacaagtgttgtatcacttttaggtagtaagctgattatttttaagtacaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catggaagacaagtgttgtatcacttttaggtagtaagctgattatttttaagtacaaca 500
Query: 301 ttgacaatttatggaaaatgtttctaaagcatataatccatgaaggattggggacattta 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ttgacaatttatggaaaatgtttctaaagcatataatccatgcaggattggggacattta 560
Query: 361 aactctccagtattttatatgtataataatttcaataaaattatgaagagatgaggtaac 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aactctccagtattttatatgtatagtaatttcaataaaattatgaagagatgaggtaac 620
Query: 421 acttcattttctacatatgaaagccaaagaatattctaggactttctaaagaaacatgac 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgattttctacatatgaaagccaaagaatattctaggactttctaaagaaacatgac 680
Query: 481 cctgtaaatgatagatgtgactatctagttcactttcattaaaataaggattacagaaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgtaaatgatagatgtgactatctagttcactttcattaaaataaggattacagaaag 740
Query: 541 taaatgatcaatctatttttaaaataccactattaatctcatatacttcatgttaaaatt 600
||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 741 taaatgatcaatctatttttaaaatactactattagtctcatatactttatgttaaaatt 800
Query: 601 gcacagtacattaaatggctattcaatgaatgttagtttttatgctaattcttgataaaa 660
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gcatagtgcattaaatggctattcaatgaatgttagtttttatgctaattcttgataaaa 860
Query: 661 cttac 665
|||||
Sbjct: 861 cttac 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
