BAC Information

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BAC

Clone NameMSMg01-547D17
Chromosome3 (Build37)
Map Location 150,370,600 - 150,550,577
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547D17.T7 (MSMg01no547_d17.b1)MSMg01-547D17.TJ (MSMg01no547_d17.g1)
ACCAG611869AG611870
length746749
length of high quality
(start - end)		673 (39 - 711)679 (67 - 745)
definitionCHROMAT_FILE: MSMg01no547_d17.b1 PHD_FILE: MSMg01no547_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:48 2005CHROMAT_FILE: MSMg01no547_d17.g1 PHD_FILE: MSMg01no547_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,370,600 - 150,371,269)(150,550,143 - 150,550,577)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TGAGCCTGTCACTTCCTCCCAGGAACTCAGCATGCTGCTTTGCCTCCAAA
TCTATCACGGATCTATCACGGAACCAAACAGTGGGACTTTTTTCTTCCCT
ATCAGCATGGCTTTCATTATGAGAGAGGCTCATGTTTTTCAAGTGAATTA
TTCCAGAGAAAGGCTCTTTTAGAGTACCATTTAAACATTGCTTTTCTTAG
TCATAATATTTTGACTTTGTTTATGCTTTTTACCAACTTAGTCATATGTG
GCTTTAAGTGTTGCTTTAATGAATAGCTTTTACCACTGTTATTTTATCTT
ATAATACACTATTTAGGTGTTTGATTTCTTTTCTATGTGTGTGCACTCAG
TGGTAACAGTCATAGTTGTGTAGAGCTGGTTTTATTTGATCTCCATTCAA
TATCAGGTTCAAACCCAGCACACACCCACAGCAGTTCATAGTTCCTGGCA
TCATCAGTAGGCTTTACCTGGGGTCCACTGTGCTCTGCACTCTTGCTTCT
ACCAGTAGGGCAGGATGCTTTCTTTGAGCAAGAATTGTTCTACAGCCTTG
ACAAATTGAAACTTTCTGGAGCAACAAAGTAAACATCAAATAAATCTAGA
CAAATTGTTTTCTAAAAGGCTATAGACTTGTTAAGTATTTGTGCTAATAA
AAATCCTCCAGTGCTTGGGGTGGACCAGTATAACTCATGGTGTTCC

TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTATAGTTCTTAATAAAATCCAGAACAATTTTTCT
TAAGGTTTTTTTTAAGGTTTCCAAGAAAGATCCACAACTCAATATATAAG
TTATTTCTATTATTGTATTATATAGAAATTAATCACAAGTCAGGTCCCTG
TCTTATGCTGTATTTTCAGAAGTAACATTTATTAATTCTTTGATTTTAGC
AGATGAGAAAGTCATGTTTACCTGAAACTGGAGTTGGGAAGATAAAGACT
GAATAATATTTTTATTTTATTAAAATGTTCACATACATCAGTAGATGCAC
CTCAAGGACAACTCCAGTACCTAAGACTCAGGGAATATCACAGATGATGG
AAGAGAAAACCTGTAATGGTGAAAGGAGCATGAAATCAGCCATGGGATTG
TGTACTCTAGAAAAGACTGAAAAGCTACACCCATGATACGGTGACAATAT
TGGTGCCAAAGCAAGAAATGAACAGTGACGGTGACGACAGGCGCATTAAC
TTAGAAGTGAAAAAGCCACTTTCAGCCCCACACCTAGACAAAGAACTGTA
AACAGTGGAGGGCTGCTGAGAGCAGGAAACAGTTCCCTTAAGCGGTTACC
TCATTCCAAGTGGTCAGCCCTGAAATCATATACAGATAACAATGCTAAAT
GGGTTAAACAGATTGCATATGTATTTTTATATGTGTATATTTTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_d17.b1 MSMg01no547_d17.b1 CHROMAT_FILE:
MSMg01no547_d17.b1 PHD_FILE: MSMg01no547_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:48 2005
         (673 letters)



>mm_chr3_150370397_150371469
          Length = 1073

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattgagcctgtcacttcctcccaggaactcagcatgctgctttgcctccaaat 63
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattgagccagtcatttcctcccaggaactcagcatgctgctttgcctccaaat 263

                                                                       
Query: 64  ctatcacggatctatcacggaaccaaacagtgggacttttttcttccctatcagcatggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatcacggatctatcacggaaccaaacagtgggacttttttcttccctatcagcatggc 323

                                                                       
Query: 124 tttcattatgagagaggctcatgtttttcaagtgaattattccagagaaaggctctttta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcattatgagagaggctcatgtttttcaagtgaattattccagagaaaggctctttta 383

                                                                       
Query: 184 gagtaccatttaaacattgcttttcttagtcataatattttgactttgtttatgcttttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtaccatttaaacattgcttttcttagtcataatattttgactttgtttatgcttttt 443

                                                                       
Query: 244 accaacttagtcatatgtggctttaagtgttgctttaatgaatagcttttaccactgtta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accaacttagtcatatgtggctttaagtgttgctttaatgaatagcttttaccactgtta 503

                                                                       
Query: 304 ttttatcttataatacactatttaggtgtttgatttcttttctatgtgtgtgcactcagt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttatcttataatacactatttaggtgtttgatttcttttctatgtgtgtgcactcagt 563

                                                                       
Query: 364 ggtaacagtcatagttgtgtagagctggttttatttgatctccattcaatatcaggttca 423
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 564 ggtaacagtcatagttgtgtagagctggttttatttgatctccactcaatatcaggttca 623

                                                                       
Query: 424 aacccagcacacacccacagcagttcatagttcctggcatcatcagtaggctttacctgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacccagcacacacccacagcagttcatagttcctggcatcatcagtaggctttacctgg 683

                                                                       
Query: 484 ggtccactgtgctctgcactcttgcttctaccagtagggcaggatgctttctttgagcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggtccactgtgctctgcactcttgcttctaccagtagggcaggatgctttctttgagcaa 743

                                                                       
Query: 544 gaattgttctacagccttgacaaattgaaactttctggagcaacaaagtaaacatcaaat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaattgttctacagccttgacaaattgaaactttctggagcaacaaagtaaacatcaaat 803

                                                                       
Query: 604 aaatctagacaaattgttttctaaaaggctatagacttgttaagtatttgtgctaataaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaatctagacaaattgttttctaaaaggctatagacttgttaagtatttgtgctaataaa 863

                     
Query: 664 aatcctccag 673
           ||||||||||
Sbjct: 864 aatcctccag 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_d17.g1 MSMg01no547_d17.g1 CHROMAT_FILE:
MSMg01no547_d17.g1 PHD_FILE: MSMg01no547_d17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:48 2005
         (679 letters)



>mm_chr3_150550143_150551221
          Length = 1079

 Score =  772 bits (399), Expect = 0.0
 Identities = 426/435 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatagttcttaataaaatccagaacaatttttcttaaggttttttttaaggtttccaaga 60
           |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 435 tatagttcttaacaaaatccagaacactttttcttaaggttttttttaaggtttctaaga 376

                                                                       
Query: 61  aagatccacaactcaatatataagttatttctattattgtattatatagaaattaatcac 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 375 aagatccacaactcaatatataagttatttctattattatattatatagaaattaatcac 316

                                                                       
Query: 121 aagtcaggtccctgtcttatgctgtattttcagaagtaacatttattaattctttgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagtcaggtccctgtcttatgctgtattttcagaagtaacatttattaattctttgattt 256

                                                                       
Query: 181 tagcagatgagaaagtcatgtttacctgaaactggagttgggaagataaagactgaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tagcagatgagaaagtcatgtttacctgaaactggagttgggaagataaagactgaataa 196

                                                                       
Query: 241 tatttttattttattaaaatgttcacatacatcagtagatgcacctcaaggacaactcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tatttttattttattaaaatgttcacatacatcagtagatgcacctcaaggacaactcca 136

                                                                       
Query: 301 gtacctaagactcagggaatatcacagatgatggaagagaaaacctgtaatggtgaaagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 gtacctaagactcagggaatatcacagatgatggaagagaaaacctgtaacggtgaaagg 76

                                                                       
Query: 361 agcatgaaatcagccatgggattgtgtactctagaaaagactgaaaagctacacccatga 420
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 75  agcgtgaaatcagccatgagattgtgtactctagaaaagactgaaaagctacatccatga 16

                          
Query: 421 tacggtgacaatatt 435
            ||||||||||||||
Sbjct: 15  aacggtgacaatatt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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