BAC Information

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BAC

Clone NameMSMg01-547H02
Chromosome3 (Build37)
Map Location 108,362,242 - 108,527,222
singlet/doubletdoublet
Overlap gene2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2
Upstream geneAlx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik
Downstream gene4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547H02.T7 (MSMg01no547_h02.b1)MSMg01-547H02.TJ (MSMg01no547_h02.g1)
ACCAG612031AG612032
length761759
length of high quality
(start - end)		714 (31 - 744)613 (59 - 671)
definitionCHROMAT_FILE: MSMg01no547_h02.b1 PHD_FILE: MSMg01no547_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:04 2005CHROMAT_FILE: MSMg01no547_h02.g1 PHD_FILE: MSMg01no547_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,362,242 - 108,362,944)(108,526,629 - 108,527,222)
sequence
CGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGGATGTG
TCACCATGCCGGTCCTTATTTTACCCTATTTAAAAAATATTTATATAGAA
TTCCTGATGAAGGTGCCCAAAATATAAGGTAAAAGTTAAGGATCCAATGT
GTTCTCTTAAAAACAAAAATAAGTGGAAAACTATTCTTCCTGCTAAGAGG
AGTTTCAGGCCAGGCTAAAATGATCTAACTTGTAAAATATCTCCACCTCA
CCCCATGAGACCAAATATTGGCCAAGAACAAGCTCACTTCTTGGCTTCCC
AAGTAGCTGGAACTACAAGCATGTGCCACACCTGGCATTGTTATGTGTCC
ATTATTTAATCCTAGAACACCAAAATTACCTAGAAAGTAAAACAAACAAG
TATGCCTTAAGTAACGGCTAATTTAAAATTTACCTCTTCCCTCAACTTTA
TCTTATTAGCAGACCCTAAGCAAAGCACTTACCACATGATTGTGAGGACC
TGAGTCAAAATCCCAGAAGTCACGTAAAATATGGCTATTGTAATACAAAC
CTGTGCTCTCAGTACTTGTAGGCTAAGTAGGCAGGACAAGTTCCAGAAGC
TCACAGCTCAGCTAGCCAAGTGTACACAGCAGCAACCACACAATTACAAC
ACACCACAAACACACTCATATAGTAAACATGAGTCCAAATATCACCCTGG
TCCTACGCCTTCTATTCTAGAACCACAAAAATCTTTAGCCAAGATTTTCA
GATCTGCATCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCTTTTCTTTTGAAAACCTTCCTGTTCTTGTCTCTATTTTT
CCAGTTCTTGATTCATGCTTTTGTCTCTTTAAATACATTAACCTTCCTTA
TTTTATTACCTATGTCGTTTTGCACTTCAAAGTCTGTGTGGGCTAGGTTC
TGCTGCCCTTCTGTCCTCTGAGGATATTTGTATAAGCTATCATAAATATA
TACATATATAGTTATATATGGTTTATATAGAGAGTTTTGGGTTTTTGTAG
TCCTTGATTCATTTATTCTCATGCTTTTCTTTCTTTAAATATATTAAATA
TTCTATGTCATATTTCAGTTTCAAAGTCTGTGTGGATTTTATATTACATA
TATAATACTCTCAACTACACTTATTAAAAAGTAGGTGTATATAAATATAT
ATTCTATTTTTTAAAAGACAGGGTCTCACTATGTAGCCCTGGTTGTCCTG
GATCTCACTGCATAGATCAAGATGGCCTCAAACACACAGAGACCCACTTG
CTTGTGCCTCCCAAGATCTGGCATTAAAGGTATGTGAGACAATACCTGAC
TCTTGTTATTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTTGTTTTGTTT
TTTGACCATTAAATGTCTTCAAGTAGAAGAATGGCACAATCTCATGGATG
CATGCGTTTGGAAAGAAGATTACAAAACAGTTCAACTGATTAGGAAGATA
GACATTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_h02.b1 MSMg01no547_h02.b1 CHROMAT_FILE:
MSMg01no547_h02.b1 PHD_FILE: MSMg01no547_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:04 2005
         (714 letters)



>mm_chr3_108362038_108363144
          Length = 1107

 Score = 1326 bits (686), Expect = 0.0
 Identities = 701/710 (98%), Gaps = 7/710 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagggatgtgtcaccatgccggtccttattttaccctatttaaaaaatatttat 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagggatgtgtcaccatgccagtccttattttaccctatttaaaaaatatttat 264

                                                                       
Query: 65  atagaattcctgatgaaggtgcccaaaatataaggtaaaagttaaggatccaatgtgttc 124
           |||||||||||||||||||||||||||||||||||       ||||||||||||||||||
Sbjct: 265 atagaattcctgatgaaggtgcccaaaatataagg-------taaggatccaatgtgttc 317

                                                                       
Query: 125 tcttaaaaacaaaaataagtggaaaactattcttcctgctaagaggagtttcaggccagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tcttaaaaacaaaaataagtggaaaactattcttcctgctaagaggagtttcaggccagg 377

                                                                       
Query: 185 ctaaaatgatctaacttgtaaaatatctccacctcaccccatgagaccaaatattggcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctaaaatgatctaacttgtaaaatatctccacctcaccccatgagaccaaatattggcca 437

                                                                       
Query: 245 agaacaagctcacttcttggcttcccaagtagctggaactacaagcatgtgccacacctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 agaacaagctcacttcttggcttcccaagtagctggaactacaagcatgtgccacacctg 497

                                                                       
Query: 305 gcattgttatgtgtccattatttaatcctagaacaccaaaattacctagaaagtaaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcattgttatgtgtccattatttaatcctagaacaccaaaattacctagaaagtaaaaca 557

                                                                       
Query: 365 aacaagtatgccttaagtaacggctaatttaaaatttacctcttccctcaactttatctt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aacaagtatgccttaagtaacggctaatttaaaatttacctcttccctcaactttatctt 617

                                                                       
Query: 425 attagcagaccctaagcaaagcacttaccacatgattgtgaggacctgagtcaaaatccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attagcagaccctaagcaaagcacttaccacatgattgtgaggacctgagtcaaaatccc 677

                                                                       
Query: 485 agaagtcacgtaaaatatggctattgtaatacaaacctgtgctctcagtacttgtaggct 544
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaaatcacgtaaaatatggctattgtaatacaaacctgtgctctcagtacttgtaggct 737

                                                                       
Query: 545 aagtaggcaggacaagttccagaagctcacagctcagctagccaagtgtacacagcagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagtaggcaggacaagttccagaagctcacagctcagctagccaagtgtacacagcagca 797

                                                                       
Query: 605 accacacaattacaacacaccacaaacacactcatatagtaaacatgagtccaaatatca 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 accacacaattacaacacaccacaaacacactcatatagtaaacatgagtccaaatatca 857

                                                             
Query: 665 ccctggtcctacgccttctattctagaaccacaaaaatctttagccaaga 714
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ccctggtcctacgccttctattctagaaccacaaaaatctttagccaaga 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1107
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1097
Effective search space:   772288
Effective search space used:   772288
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no547_h02.g1 MSMg01no547_h02.g1 CHROMAT_FILE:
MSMg01no547_h02.g1 PHD_FILE: MSMg01no547_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:05 2005
         (613 letters)



>mm_chr3_108526629_108527642
          Length = 1014

 Score = 1133 bits (586), Expect = 0.0
 Identities = 592/594 (99%), Gaps = 1/594 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccttttcttttgaaaaccttcctgttcttgtctc-tatttttccagttcttgattcatg 59
           ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 594 tccttttcttttgaaaaccttcctgttcttgtctcttttttttccagttcttgattcatg 535

                                                                       
Query: 60  cttttgtctctttaaatacattaaccttccttattttattacctatgtcgttttgcactt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttttgtctctttaaatacattaaccttccttattttattacctatgtcgttttgcactt 475

                                                                       
Query: 120 caaagtctgtgtgggctaggttctgctgcccttctgtcctctgaggatatttgtataagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caaagtctgtgtgggctaggttctgctgcccttctgtcctctgaggatatttgtataagc 415

                                                                       
Query: 180 tatcataaatatatacatatatagttatatatggtttatatagagagttttgggtttttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tatcataaatatatacatatatagttatatatggtttatatagagagttttgggtttttg 355

                                                                       
Query: 240 tagtccttgattcatttattctcatgcttttctttctttaaatatattaaatattctatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tagtccttgattcatttattctcatgcttttctttctttaaatatattaaatattctatg 295

                                                                       
Query: 300 tcatatttcagtttcaaagtctgtgtggattttatattacatatataatactctcaacta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tcatatttcagtttcaaagtctgtgtggattttatattacatatataatactctcaacta 235

                                                                       
Query: 360 cacttattaaaaagtaggtgtatataaatatatattctattttttaaaagacagggtctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cacttattaaaaagtaggtgtatataaatatatattctattttttaaaagacagggtctc 175

                                                                       
Query: 420 actatgtagccctggttgtcctggatctcactgcatagatcaagatggcctcaaacacac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 actatgtagccctggttgtcctggatctcactgcatagatcaagatggcctcaaacacac 115

                                                                       
Query: 480 agagacccacttgcttgtgcctcccaagatctggcattaaaggtatgtgagacaatacct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 agagacccacttgcttgtgcctcccaagatctggcattaaaggtatgtgagacaatacct 55

                                                                 
Query: 540 gactcttgttattttttgtttgtttgtttgtttgtttttgttttgttttgtttt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  gactcttgttattttttgtttgtttgtttgtttgtttttgttttgttttgtttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space:   605412
Effective search space used:   605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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