Query= MSMg01no547_i20.b1 MSMg01no547_i20.b1 CHROMAT_FILE:
MSMg01no547_i20.b1 PHD_FILE: MSMg01no547_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:13 2005
(619 letters)
>mm_chr3_9505441_9506458
Length = 1018
Score = 503 bits (260), Expect = e-146
Identities = 269/272 (98%), Gaps = 1/272 (0%)
Strand = Plus / Minus
Query: 348 ggaatataactttctatattagaaaaattgagtttcatatcatatatgaggcagatgttt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaatataactttctatattagaaaaattgagtttcatatcatatatgaggcagatgttt 759
Query: 408 ttaaaattagtacttactctaagatattttggaagactggacatttacaagtgaattggc 467
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 taaaaattagtacttactctaagatattttggaagactggacatttacaagtgaattggc 699
Query: 468 agctgttagaatgagctccctgagaagctaaagaacagagaggaaaccttactgggagag 527
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agctgttagaatgagctccct-agaagctaaagaacagagaggaaaccttactgggagag 640
Query: 528 gcagggcgctgcatcttcctgtggcagatgacccgccacagttaccatcccacacaccca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gcagggcgctgcatcttcctgtggcagatgacccgccacagttaccatcccacacaccca 580
Query: 588 tgttcccttgagtcaggaaatcacatgtttgg 619
||| ||||||||||||||||||||||||||||
Sbjct: 579 tgtccccttgagtcaggaaatcacatgtttgg 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_i20.g1 MSMg01no547_i20.g1 CHROMAT_FILE:
MSMg01no547_i20.g1 PHD_FILE: MSMg01no547_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:13 2005
(490 letters)
>mm_chr3_9297905_9298798
Length = 894
Score = 857 bits (443), Expect = 0.0
Identities = 478/491 (97%), Gaps = 6/491 (1%)
Strand = Plus / Plus
Query: 2 aggccaggctggtctacaaagtgagttccaggacagccagggctacacagagaaaccctg 61
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggccaggctggactacaaagtgagttccaggacagccagggctacacagagaaaccctg 261
Query: 62 tctcgaaacaaacaaacaagcaaacaaa-caaacaaacaaacaagcctcttcctagaagc 120
|||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||
Sbjct: 262 tctcgaaacaaacaaacaagcaaa-aaagcaaacaaacaaacaaacctcttcctagaagc 320
Query: 121 tatttctgatgcagtctcagtccactttttt--gtaaaattagaaatggctggcagtgct 178
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tatttctgatgcagtctcagtccacttttttttgtaaaattagaaatggctggcagtgct 380
Query: 179 agtggg--aaagtcatagtggtggacgcagccaccccaggacaacgctccaagttgtgct 236
|||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 381 agtgggggaaagtcatagtggtggacgcagccaccccaggacaatgctccaagctgtgct 440
Query: 237 gtgcttcaagacagctccgagagtcaccacctgctgaccaatgcttgctggtaagctaag 296
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 gtgcttcaagacagctccgagagtcaccacctgctgaccagtgcttgctggtaagctaag 500
Query: 297 cacctggaacaaagagcaaacagggttgtctgtccttggtccactgtggaggacacccag 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacctggaacaaagagcaaacagggttgtctgtccttggtccactgtggaggacacccag 560
Query: 357 atgccttctttcaattgcacagggtttttattggggctaaaagcccacacaaagtcgagc 416
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgccttctttcaattacacagagtttttattggggctaaaagcccacacaaagtcgagc 620
Query: 417 taaaaaggccaatggagagaccctaatgaatgcaggacccccatgacttccatgagtgta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaaggccaatggagagaccctaatgaatgcaggacccccatgacttccatgagtgta 680
Query: 477 acacacacagg 487
|||||||||||
Sbjct: 681 acacacacagg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 894
Length adjustment: 10
Effective length of query: 480
Effective length of database: 884
Effective search space: 424320
Effective search space used: 424320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
