BAC Information

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BAC

Clone NameMSMg01-547O17
Chromosome3 (Build37)
Map Location 48,378,818 - 48,497,099
singlet/doubletdoublet
Overlap gene1700018B24Rik
Upstream geneLOC666202, LOC666208
Downstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547O17.T7 (MSMg01no547_o17.b1)MSMg01-547O17.TJ (MSMg01no547_o17.g1)
ACCAG612391AG612392
length734741
length of high quality
(start - end)		698 (37 - 734)676 (66 - 741)
definitionCHROMAT_FILE: MSMg01no547_o17.b1 PHD_FILE: MSMg01no547_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:41 2005CHROMAT_FILE: MSMg01no547_o17.g1 PHD_FILE: MSMg01no547_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:41 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(48,496,408 - 48,497,099)(48,378,818 - 48,379,493)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCCT
CAACCTCTGTCAGACATGAGAAGCACTTTAACAGAAATATCTAACAAGAG
ATGCCTAAAAGATCCTTTAGGCAACTAACTAATATCTGTTATACAGATAA
CTTGGCACTTACTGTATTTATTATGAAGGATGGGCATAAGAAATTACTAT
TATAAAATGTAATGGATGTTCCATATATATGAAGTTTCAGAGCCAGAGCC
TCATGTTGAAAGGCAAGTTGGATCCCTTCAAAATTCTGGCAGGCATTTTA
TTCAATTTTCATTCTTTTCTCCCCATTTGCATGATTAAAATTAGACTTTA
ATCATTAGCCATGTCTGCCTTGTGGCAAAATATATGCATATAATTCTAAC
ACTAAATACTGATTATTCGGCTTTTAGCAAATAGTCTTTAATGTGAGAGC
TTACCATTTTCTCTATGACAGAACTAGCTATGTCATGCTACAGACTTTAC
TCATCATACGTGATTCTAATGTGACATTATACTGTGTATATTTTGTATTC
TTTCCTTATTGGCAATGAATTAACAAGTAGTTTTTTAAAAAAATAAACAC
TCCTGTAACAGAATTACAGACAGGGTCAGCTTAAAGTTTTTTTTTTTTAA
ACCACATCTGCAAGTAACAGTGTTTGTTCATTATAATCAACTTGATACAA
CTTGAGAAAGTGTCTTTTTGAAAAATTATTCAGA

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCATATACAAACTTCTCAGATAAGAAATATTCCCT
GCATTTGGTGTATCTGCATTGTATGAGCCACACTTCATCTTTAACTTAAA
ATCTGTCTATATATCTATATTTATCTACTTATCTATGAAGTTTCAAATTA
CAAATTTTATTTCCTTGACATCAGAAATTGTTACTCTATTTGTTTACTTT
GAAAGTTTAGTTGTTTAAACATATTCATTCAGAAAAAAAATAATAATTAT
CAAAATTAAACTGTCAGTTTCTTTTGAAAATATAATTTTACTTAATAGAA
TGAATGGGTTTAATAATTTGAAACAGTATAAATAATTTGTCAAAAATTCT
TTTAGTAGTTGGTGCATGCATCCCAAGGACACCGAGTCACGTGCAGCAAA
GAGACTGTGGCTTTCTGCTCCCAGATTTTTTTGCTCACACTTTGAAGAAT
TATGGAAAAACAATCAAATACTAACATATGGGTAGGTTTATTGCTGTATA
CCAGTCAAGTTGAGTATTCAGAGTGGGAACAAGGATCAGATGGTTAGATA
GGTTGCTGAAGCCATGTACTGAACTTCAGGTCTAGCCTTGTCTTAGAGAT
GAGTTACTCCAGGGTAAACATAAATGGCTTAAAGAAGGCACATAAAATAA
TTCCTTTCATTTATGGCTGACCATCAGTTAACCTGTCAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_o17.b1 MSMg01no547_o17.b1 CHROMAT_FILE:
MSMg01no547_o17.b1 PHD_FILE: MSMg01no547_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:41 2005
         (698 letters)



>mm_chr3_48496202_48497299
          Length = 1098

 Score = 1338 bits (692), Expect = 0.0
 Identities = 692/692 (100%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcctcaacctctgtcagacatgagaagcactttaacagaaatatctaacaagagat 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 gaattcctcaacctctgtcagacatgagaagcactttaacagaaatatctaacaagagat 839

                                                                       
Query: 67  gcctaaaagatcctttaggcaactaactaatatctgttatacagataacttggcacttac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gcctaaaagatcctttaggcaactaactaatatctgttatacagataacttggcacttac 779

                                                                       
Query: 127 tgtatttattatgaaggatgggcataagaaattactattataaaatgtaatggatgttcc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tgtatttattatgaaggatgggcataagaaattactattataaaatgtaatggatgttcc 719

                                                                       
Query: 187 atatatatgaagtttcagagccagagcctcatgttgaaaggcaagttggatcccttcaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atatatatgaagtttcagagccagagcctcatgttgaaaggcaagttggatcccttcaaa 659

                                                                       
Query: 247 attctggcaggcattttattcaattttcattcttttctccccatttgcatgattaaaatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 attctggcaggcattttattcaattttcattcttttctccccatttgcatgattaaaatt 599

                                                                       
Query: 307 agactttaatcattagccatgtctgccttgtggcaaaatatatgcatataattctaacac 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 agactttaatcattagccatgtctgccttgtggcaaaatatatgcatataattctaacac 539

                                                                       
Query: 367 taaatactgattattcggcttttagcaaatagtctttaatgtgagagcttaccattttct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 taaatactgattattcggcttttagcaaatagtctttaatgtgagagcttaccattttct 479

                                                                       
Query: 427 ctatgacagaactagctatgtcatgctacagactttactcatcatacgtgattctaatgt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctatgacagaactagctatgtcatgctacagactttactcatcatacgtgattctaatgt 419

                                                                       
Query: 487 gacattatactgtgtatattttgtattctttccttattggcaatgaattaacaagtagtt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gacattatactgtgtatattttgtattctttccttattggcaatgaattaacaagtagtt 359

                                                                       
Query: 547 ttttaaaaaaataaacactcctgtaacagaattacagacagggtcagcttaaagtttttt 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttttaaaaaaataaacactcctgtaacagaattacagacagggtcagcttaaagtttttt 299

                                                                       
Query: 607 ttttttaaaccacatctgcaagtaacagtgtttgttcattataatcaacttgatacaact 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttttttaaaccacatctgcaagtaacagtgtttgttcattataatcaacttgatacaact 239

                                           
Query: 667 tgagaaagtgtctttttgaaaaattattcaga 698
           ||||||||||||||||||||||||||||||||
Sbjct: 238 tgagaaagtgtctttttgaaaaattattcaga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space:   748544
Effective search space used:   748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_o17.g1 MSMg01no547_o17.g1 CHROMAT_FILE:
MSMg01no547_o17.g1 PHD_FILE: MSMg01no547_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:41 2005
         (676 letters)



>mm_chr3_48378618_48379693
          Length = 1076

 Score = 1307 bits (676), Expect = 0.0
 Identities = 676/676 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatatacaaacttctcagataagaaatattccctgcatttggtgtatctgcattgtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatatacaaacttctcagataagaaatattccctgcatttggtgtatctgcattgtatg 260

                                                                       
Query: 61  agccacacttcatctttaacttaaaatctgtctatatatctatatttatctacttatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccacacttcatctttaacttaaaatctgtctatatatctatatttatctacttatcta 320

                                                                       
Query: 121 tgaagtttcaaattacaaattttatttccttgacatcagaaattgttactctatttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagtttcaaattacaaattttatttccttgacatcagaaattgttactctatttgttt 380

                                                                       
Query: 181 actttgaaagtttagttgtttaaacatattcattcagaaaaaaaataataattatcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actttgaaagtttagttgtttaaacatattcattcagaaaaaaaataataattatcaaaa 440

                                                                       
Query: 241 ttaaactgtcagtttcttttgaaaatataattttacttaatagaatgaatgggtttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaactgtcagtttcttttgaaaatataattttacttaatagaatgaatgggtttaata 500

                                                                       
Query: 301 atttgaaacagtataaataatttgtcaaaaattcttttagtagttggtgcatgcatccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgaaacagtataaataatttgtcaaaaattcttttagtagttggtgcatgcatccca 560

                                                                       
Query: 361 aggacaccgagtcacgtgcagcaaagagactgtggctttctgctcccagatttttttgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggacaccgagtcacgtgcagcaaagagactgtggctttctgctcccagatttttttgct 620

                                                                       
Query: 421 cacactttgaagaattatggaaaaacaatcaaatactaacatatgggtaggtttattgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacactttgaagaattatggaaaaacaatcaaatactaacatatgggtaggtttattgct 680

                                                                       
Query: 481 gtataccagtcaagttgagtattcagagtgggaacaaggatcagatggttagataggttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtataccagtcaagttgagtattcagagtgggaacaaggatcagatggttagataggttg 740

                                                                       
Query: 541 ctgaagccatgtactgaacttcaggtctagccttgtcttagagatgagttactccagggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgaagccatgtactgaacttcaggtctagccttgtcttagagatgagttactccagggt 800

                                                                       
Query: 601 aaacataaatggcttaaagaaggcacataaaataattcctttcatttatggctgaccatc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaacataaatggcttaaagaaggcacataaaataattcctttcatttatggctgaccatc 860

                           
Query: 661 agttaacctgtcagat 676
           ||||||||||||||||
Sbjct: 861 agttaacctgtcagat 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space:   709956
Effective search space used:   709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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