BAC Information

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BAC

Clone NameMSMg01-548C06
Chromosome3 (Build37)
Map Location 144,778,939 - 144,779,268
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5
Downstream geneOdf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548C06.T7 (MSMg01no548_c06.b1)MSMg01-548C06.TJ (MSMg01no548_c06.g1)
ACCAG612560AG612561
length799761
length of high quality
(start - end)
329 (44 - 372)334 (74 - 407)
definitionCHROMAT_FILE: MSMg01no548_c06.b1 PHD_FILE: MSMg01no548_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:58 2005CHROMAT_FILE: MSMg01no548_c06.g1 PHD_FILE: MSMg01no548_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACTCAATGGAG
TACTACTCCGCTATTAAAAAGAATGATTTTATGAAATTCCTAGCCAAATG
GTATGGACCTTGGAGGGGCTCCATCCTTGATTGAGGTAACACCCTTCACA
AAATAAAACCCTCAAATTTATGTATTTCATCTGAAAAAAGTGGAATATTT
AATCCCCACAAACTGAAGGGATAACTCCCAGTATTATAAGTTATAATAAT
TTTGGCTCAAATCCTCCTTGGAACATTTCTAAGATAGGAATAGGAACGAA
CTGGTAATTGGGTGGCGTACCCCTTAATGGCTCCCCTTCTCTTTATGAN
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTATTCAAATCAGTCCCATTGCTTTCT
TTTTTAAATCTTTTTTTTTTTTTTTTTTTGGGCATGTATCTGTGCATTTG
GACAGGTAGAGGCCATGATGGTGGAGGCAGGACAGCTTTCAGGAGTGGGC
TATCGCCCTGGGCTCTGCTGAGGCAGGGCCTCTCTCTCCATGTTCACTGC
CCATAATGCACCTCAACCCCCAATTGACACTCTCTTGCAGCAGGTGGTTT
CTTGCACTCCCTTGCCATCTCCCTGGCCCAATCCAGCTATAGTCTAACTA
AAAGAGCACTGTAAAAAGCTCTGTGATAAAGGAGACATGTTAAGCATTCT
TAAGCTGTTCTCGGGCTCTCTTGGGAAACAGAAAAAACTTACAGAGGATG
CAATGAGAATTGCTGAGTAATAAGGAATAAAGAATAGCAACCAAAGCTGC
TGCCTACGCTGTTAAAATAACCACAGTTGGTGAGTTATTCCAAAAACTGG
GATTAAATTAAAGAAGAGAATTAATACTTTTCCCTTGTAGTGTTTATAGT
CTTGCCGGATAAATGGTAACCTTGGGCTGGTACCAGTTTAAAAGGTAAAA
AGATTTTGCACTTCATCAAGCCCCCGGTTTATATTATATTTAAAGTTATT
ATAAACCTTGGGGGGTTGTTATTTTCAGAATTCCTAAAAGGGGTATAATT
TTTTAAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_c06.g1 MSMg01no548_c06.g1 CHROMAT_FILE:
MSMg01no548_c06.g1 PHD_FILE: MSMg01no548_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:58 2005
         (334 letters)



>mm_chr3_144778681_144779414
          Length = 734

 Score =  578 bits (299), Expect = e-169
 Identities = 323/339 (95%), Gaps = 14/339 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattcaaatcagtcccattgctttcttttttaaat-----ctttttttttttttttttt 55
           ||||||||||||||||||||||||||||||||||||     |         |||||||||
Sbjct: 588 ctattcaaatcagtcccattgctttcttttttaaatcccccc---------ttttttttt 538

                                                                       
Query: 56  tgggcatgtatctgtgcatttggacaggtagaggccatgatggtggaggcaggacagctt 115
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tgtgcatgtatctgtgcatgtggacaggtagaggccatgatggtggaggcaggacagctt 478

                                                                       
Query: 116 tcaggagtgggctatcgccctgggctctgctgaggcagggcctctctctccatgttcact 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tcaggagtgggctatcgccctgggctctgctgaggcagggcctctctctccatgttcact 418

                                                                       
Query: 176 gcccataatgcacctcaacccccaattgacactctcttgcagcaggtggtttcttgcact 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcccataatgcacctcaacccccaattgacactctcttgcagcaggtggtttcttgcact 358

                                                                       
Query: 236 cccttgccatctccctggcccaatccagctatagtctaactaaaagagcactgtaaaaag 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cccttgccatctccctggcccaatccagctatagtctaactaaaagagcactgtaaaaag 298

                                                  
Query: 296 ctctgtgataaaggagacatgttaagcattcttaagctg 334
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ctctgtgataaaggagacatgttaagcattcttaagctg 259


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)